RLG00000003657

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000490
Physical Location & Seq
Forward (+)
51355577 .. 51356158
582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003657

Sequence Viewer

Length: 582 bp
ATGTCGGAGCTGATGCAACATCTGAATGAATTGAGAAAAGTCCAAGAAGAACTAACAGAAATTGTGGGGATAAACAACTTAGTTGAAGAGTTTCATTTGCAAAAATTACATTACTTAGATGCAGTGATCAAGGAGACATTTTGTTTGCACCCTGTACTGCTGCTTCTAGCGCCCCGATGTTCAAGCCAATCCACCACCATTGGTGGCTATTACATACCTAAAGGTTGCATTGTTTTTCTCAATGCTTGGGCCATACACAGAGATTCAAGTGTCGGGGACGATCCCTTGGAATTTAGACCCTGGAGGTTCCTAAACACTAATACAAGCAATAGGTTTGGGTACCAGGGCAATAACTTTCACTATCTTCCATTTGGTTCAGGGAGAAGAATATGTCCTGGGATTCCCTTCACAGAGAGGATTCTAGTCTATGTGTTAGCTTCATTTTTGCATTCGTTTGAGTGGACATTGTCTAATGACGCAACGGTTGACCTTTCAAACAAATTTGGGATTGTGACAAAGAAAAAAGCTCCACTTATTGTTGTACCAACACCCAGGTTATCCAATTTGGAGCTCTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

194

Amino Acids

22.05

Weight (kDa)

7.05

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 176 2.7e-45 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 339
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 2 cut(s) 290, 500
AfaI GTAC 3 cut(s) 156, 341, 543
AgsI TTSAA 4 cut(s) 86, 183, 267, 495
AjnI CCWGG 4 cut(s) 299, 342, 394, 551
AluBI AGCT 4 cut(s) 10, 437, 527, 571
AluI AGCT 4 cut(s) 10, 437, 527, 571
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 290, 500
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
Asp700I GAANNNNTTC 1 cut(s) 90
Asp718I GGTACC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 573
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 147
BciT130I CCWGG 4 cut(s) 301, 344, 396, 553
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 2 cut(s) 167, 422
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 4 cut(s) 301, 344, 396, 553
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 308, 341
BmrFI CCNGG 4 cut(s) 301, 344, 396, 553
BmsI GCATC 2 cut(s) 3, 109
BpmI CTGGAG 1 cut(s) 322
BsaJI CCNNGG 5 cut(s) 285, 299, 343, 395, 551
BseBI CCWGG 4 cut(s) 301, 344, 396, 553
BseDI CCNNGG 5 cut(s) 285, 299, 343, 395, 551
BseXI GCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 573
BslFI GGGAC 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 2 cut(s) 126, 280
BspANI GGCC 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 308, 341
BspPI GGATC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 339
BssECI CCNNGG 5 cut(s) 285, 299, 343, 395, 551
BssMI GATC 2 cut(s) 126, 280
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 4 cut(s) 301, 344, 396, 553
Bst4CI ACNGT 1 cut(s) 484
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 79, 115
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 129, 283
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 2 cut(s) 126, 280
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 4 cut(s) 301, 344, 396, 553
BstSCI CCNGG 4 cut(s) 299, 342, 394, 551
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 249
CseI GACGC 1 cut(s) 485
Csp6I GTAC 3 cut(s) 155, 340, 542
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviJI RGCY 7 cut(s) 10, 186, 207, 251, 437, 527, 571
CviKI_1 RGCY 7 cut(s) 10, 186, 207, 251, 437, 527, 571
CviQI GTAC 3 cut(s) 155, 340, 542
DdeI CTNAG 2 cut(s) 79, 115
DpnI GATC 2 cut(s) 128, 282
DpnII GATC 2 cut(s) 126, 280
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 571
EcoRII CCWGG 4 cut(s) 299, 342, 394, 551
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 285
FaiI YATR 5 cut(s) 215, 254, 391, 429, 576
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 2 cut(s) 167, 422
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 322
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 1 cut(s) 251
HgaI GACGC 1 cut(s) 485
HhaI GCGC 1 cut(s) 172
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 3 cut(s) 263, 400, 418
Hpy166II GTNNAC 2 cut(s) 462, 487
Hpy188I TCNGA 2 cut(s) 7, 24
Hpy8I GTNNAC 2 cut(s) 462, 487
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4V TGCA 6 cut(s) 16, 100, 122, 148, 228, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 79, 115
HspAI GCGC 1 cut(s) 170
KpnI GGTACC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 2 cut(s) 126, 280
LmnI GCTCC 3 cut(s) 7, 532, 568
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 2 cut(s) 3, 109
MaeI CTAG 2 cut(s) 167, 422
MaeIII GTNAC 1 cut(s) 511
MalI GATC 2 cut(s) 128, 282
MboI GATC 2 cut(s) 126, 280
MboII GAAGA 4 cut(s) 59, 98, 356, 396
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 6 cut(s) 29, 60, 104, 290, 500, 562
MnlI CCTC 2 cut(s) 297, 408
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 1 cut(s) 580
MslI CAYNNNNRTG 1 cut(s) 24
MspR9I CCNGG 4 cut(s) 301, 344, 396, 553
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 4 cut(s) 301, 344, 396, 553
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 2 cut(s) 126, 280
NlaIV GGNNCC 2 cut(s) 308, 341
NmuCI GTSAC 1 cut(s) 511
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 3 cut(s) 263, 400, 418
PflFI GACNNNGTC 1 cut(s) 466
PkrI GCNGC 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 573
Psp6I CCWGG 4 cut(s) 299, 342, 394, 551
PspGI CCWGG 4 cut(s) 299, 342, 394, 551
PspN4I GGNNCC 2 cut(s) 308, 341
PspPI GGNCC 1 cut(s) 249
PsyI GACNNNGTC 1 cut(s) 466
RsaI GTAC 3 cut(s) 156, 341, 543
RsaNI GTAC 3 cut(s) 155, 340, 542
RseI CAYNNNNRTG 1 cut(s) 24
SacI GAGCTC 1 cut(s) 573
SaqAI TTAA 1 cut(s) 580
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 2 cut(s) 126, 280
Sau96I GGNCC 1 cut(s) 249
ScrFI CCNGG 4 cut(s) 301, 344, 396, 553
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 2 cut(s) 3, 109
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 6 cut(s) 29, 60, 104, 290, 500, 562
SspMI CTAG 2 cut(s) 167, 422
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 4 cut(s) 299, 342, 394, 551
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 484
TasI AATT 6 cut(s) 29, 60, 104, 290, 500, 562
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 3 cut(s) 263, 400, 418
Tru1I TTAA 1 cut(s) 580
Tru9I TTAA 1 cut(s) 580
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 42, 83, 429
TspRI CASTG 1 cut(s) 129
Tth111I GACNNNGTC 1 cut(s) 466
XapI RAATTY 2 cut(s) 290, 500
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 167, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.