Rh3AG071400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000490
Physical Location & Seq
Reverse (-)
5517948 .. 5518317
370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG071400.1

Sequence Viewer

Length: 243 bp
ATGGAATCCCAATCAGATAGTGATCAAGGCTTGGGCGATGTTCTTGACGTGCCAGGTGGACCTTCCGGTGGCGAGGACCATGAAATCGGCCCACTTGCAGTGCTTGTTCGTCGGTATGACCTTGACGTCGTCGGCCTTGACTTCGCTGAGAACCGTCTCGACCTCCTGGAGATCAAGCAGGCCTTCCTTGGCGGCGGCGGCGGTGGAGGAGTAGAAGGCCTGGTGCAGAGATGGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.38

Weight (kDa)

4.17

Isoelectric Point (pI)

61.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000490)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10240 FvH4_5g00571 FvH4_5g00571 FvH4_5g00571 FvH4_5g00572 FvH4_5g00572 FvH4_5g00572 FvH4_5g00573 FvH4_5g37440 FvH4_5g37450
prunus_persica Prupe.5G078400_v2.0.a1 Prupe.5G078500_v2.0.a1 Prupe.5G078600_v2.0.a1 Prupe.5G078800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0419931 RchiOBHm_Chr4g0419951 RchiOBHm_Chr4g0420051 RchiOBHm_Chr7g0201681 RchiOBHm_Chr7g0201771 RchiOBHm_Chr7g0201781 RchiOBHm_Chr7g0201791 RchiOBHm_Chr7g0225701 RchiOBHm_Chr7g0225731 RchiOBHm_Chr7g0225761 RchiOBHm_Chr7g0225791 RchiOBHm_Chr7g0225861
rosa_laevigata RLG00000001786 RLG00000001795 RLG00000003649 RLG00000003650 RLG00000003651 RLG00000003652 RLG00000003655 RLG00000003656 RLG00000003657
rosa_multiflora Rmu_sc0001030.1_g000001 Rmu_sc0001030.1_g000005 Rmu_sc0001030.1_g000006 Rmu_sc0006133.1_g000002 Rmu_sc0006637.1_g000005 Rmu_sc0012416.1_g000003 Rmu_sc0016902.1_g000001 Rmu_sc0025481.1_g000003
rosa_roxburghii Rroxscaffold_3G00233490 Rroxscaffold_3G00233550 Rroxscaffold_3G00233560 Rroxscaffold_3G00255100 Rroxscaffold_3G00255110
rosa_rugosa Rorug07G0065300 Rorug07G0065400 Rorug07G0065500 Rorug07G0065600 Rorug07G0065600 Rorug07G0065600 Rorug07G0065700 Rorug07G0065800 Rorug07G0065900 Rorug07G0232900
rosa_samantha Rh3AG071400 Rh3BG286400 Rh3CG072700 Rh4BG225100 Rh4CG235600 Rh5CG585000 Rh7AG192600 Rh7AG193000 Rh7AG193100 Rh7AG193300 Rh7AG371100 Rh7AG387700 Rh7BG194700 Rh7BG194900 Rh7BG195000 Rh7BG366600 Rh7CG203800 Rh7CG204000 Rh7CG204300 Rh7CG389700 Rh7CG407300 Rh7DG198100 Rh7DG198900 Rh7DG199100 Rh7DG377600
rosa_wichuraiana Rw0G020990 Rw7G016880 Rw7G016890 Rw7G028030 Rw7G031840 Rw7G031890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AatII GACGTC 1 cut(s) 129
AciI CCGC 4 cut(s) 192, 195, 198, 201
AcyI GRCGYC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 68
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 3 cut(s) 52, 165, 219
Alw26I GTCTC 1 cut(s) 161
AoxI GGCC 4 cut(s) 88, 133, 180, 217
AspS9I GGNCC 3 cut(s) 59, 76, 89
AvaII GGWCC 2 cut(s) 59, 76
BccI CCATC 1 cut(s) 225
BciT130I CCWGG 3 cut(s) 54, 167, 221
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 241
BisI GCNGC 3 cut(s) 193, 196, 199
BlsI GCNGC 3 cut(s) 194, 197, 200
Bme1390I CCNGG 3 cut(s) 54, 167, 221
Bme18I GGWCC 2 cut(s) 59, 76
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 59, 76, 89
BmrFI CCNGG 3 cut(s) 54, 167, 221
BpmI CTGGAG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 3 cut(s) 54, 167, 221
BseDI CCNNGG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 222
BshFI GGCC 4 cut(s) 90, 135, 182, 219
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsnI GGCC 4 cut(s) 90, 135, 182, 219
Bsp143I GATC 2 cut(s) 22, 171
BspACI CCGC 4 cut(s) 192, 195, 198, 201
BspANI GGCC 4 cut(s) 90, 135, 182, 219
BspCNI CTCAG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 2 cut(s) 22, 171
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 3 cut(s) 54, 167, 221
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 25, 174
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 22, 171
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 3 cut(s) 54, 167, 221
BstSCI CCNGG 3 cut(s) 52, 165, 219
BsuRI GGCC 4 cut(s) 90, 135, 182, 219
BtgZI GCGATG 1 cut(s) 51
BtrI CACGTC 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 3 cut(s) 59, 76, 89
CviAII CATG 1 cut(s) 80
CviJI RGCY 5 cut(s) 30, 90, 135, 182, 219
CviKI_1 RGCY 5 cut(s) 30, 90, 135, 182, 219
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 24, 173
DpnII GATC 2 cut(s) 22, 171
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 187
Eco147I AGGCCT 2 cut(s) 182, 219
Eco47I GGWCC 2 cut(s) 59, 76
EcoRII CCWGG 3 cut(s) 52, 165, 219
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 1 cut(s) 83
FaiI YATR 2 cut(s) 81, 117
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 193, 196, 199
Fsp4HI GCNGC 3 cut(s) 193, 196, 199
FspBI CTAG 1 cut(s) 241
GluI GCNGC 3 cut(s) 193, 196, 199
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 4 cut(s) 90, 135, 182, 219
HapII CCGG 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 83
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 44, 158
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 3 cut(s) 114, 131, 134
HpyAV CCTTC 3 cut(s) 72, 193, 209
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 48, 126
HpyCH4V TGCA 2 cut(s) 98, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 2 cut(s) 48, 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 22, 171
LpnPI CCDG 8 cut(s) 39, 66, 79, 152, 164, 179, 206, 233
MaeI CTAG 1 cut(s) 241
MaeII ACGT 2 cut(s) 48, 126
MalI GATC 2 cut(s) 24, 173
MboI GATC 2 cut(s) 22, 171
MnlI CCTC 3 cut(s) 67, 173, 200
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 3 cut(s) 54, 167, 221
MvaI CCWGG 3 cut(s) 54, 167, 221
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 2 cut(s) 22, 171
NlaIII CATG 1 cut(s) 83
PceI AGGCCT 2 cut(s) 182, 219
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 3 cut(s) 194, 197, 200
Psp6I CCWGG 3 cut(s) 52, 165, 219
PspGI CCWGG 3 cut(s) 52, 165, 219
PspPI GGNCC 3 cut(s) 59, 76, 89
PsyI GACNNNGTC 1 cut(s) 128
SatI GCNGC 3 cut(s) 193, 196, 199
Sau3AI GATC 2 cut(s) 22, 171
Sau96I GGNCC 3 cut(s) 59, 76, 89
ScrFI CCNGG 3 cut(s) 54, 167, 221
SetI ASST 6 cut(s) 51, 58, 64, 123, 129, 165
SinI GGWCC 2 cut(s) 59, 76
SseBI AGGCCT 2 cut(s) 182, 219
SsiI CCGC 4 cut(s) 192, 195, 198, 201
SspMI CTAG 1 cut(s) 241
StuI AGGCCT 2 cut(s) 182, 219
StyD4I CCNGG 3 cut(s) 52, 165, 219
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 2 cut(s) 51, 129
TaqI TCGA 1 cut(s) 159
TauI GCSGC 3 cut(s) 195, 198, 201
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 105
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 59, 76
XspI CTAG 1 cut(s) 241
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.