Rmu_sc0002239.1_g000004

21 kDa protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002239.1
OG0009725
Physical Location & Seq
Forward (+)
19015 .. 19488
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002239.1_g000004.1.cds

Sequence Viewer

Length: 474 bp
atgtatccaaggttgtgctgcaatgttctcaaaatccacgcgggtaaaatcgggatgagtgctgaagttctatctcaaactgccctcgatatagcccttgaattcaccaaacaaactcatattacagcgaaaggctattcagaaaccaaagccttgaatcccgttgtgacatcagcaatgcgtgactgtgtggaggagctcaatgtcgctgtgcagatgctccaaaagtctaaagttgagttgggtatggtaattaaaggctctacttctgggttacacgttagtaatgttcaaacatgggttagcgctgcattaaccaatctaaacacttgcaaggatggattcgtcgaccataatctaaatggaacagtagaaaaaattaccaccagaaaaactgtaaaggcagcacatttgacgagcaatgccttggcactcatcaacttgtgtgtctctgctaaagttaccttgccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

157

Amino Acids

16.87

Weight (kDa)

9.03

Isoelectric Point (pI)

15.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 41
AciI CCGC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 84
AfeI AGCGCT 1 cut(s) 307
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 3 cut(s) 101, 157, 293
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 454
Aor51HI AGCGCT 1 cut(s) 307
ApeKI GCWGC 3 cut(s) 18, 308, 404
ApoI RAATTY 1 cut(s) 101
AspLEI GCGC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 5, 295, 416
BccI CCATC 1 cut(s) 332
BciVI GTATCC 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 454
BfoI RGCGCY 1 cut(s) 309
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 3 cut(s) 19, 309, 405
BlsI GCNGC 3 cut(s) 20, 310, 406
BmsI GCATC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 8, 426
Bse3DI GCAATG 3 cut(s) 28, 183, 427
BseDI CCNNGG 2 cut(s) 8, 426
BseGI GGATG 2 cut(s) 60, 343
BseMI GCAATG 3 cut(s) 28, 183, 427
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 5, 295, 416
BsgI GTGCAG 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 201
BspACI CCGC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 41
BsrDI GCAATG 3 cut(s) 28, 183, 427
BssECI CCNNGG 2 cut(s) 8, 426
BssT1I CCWWGG 2 cut(s) 8, 426
Bst4CI ACNGT 3 cut(s) 188, 370, 397
BstF5I GGATG 2 cut(s) 60, 343
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 1 cut(s) 308
BstMAI GTCTC 1 cut(s) 454
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 5, 295, 416
BsuI GTATCC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 60, 343
CfoI GCGC 1 cut(s) 308
CviAII CATG 1 cut(s) 297
CviJI RGCY 5 cut(s) 95, 135, 152, 199, 261
CviKI_1 RGCY 5 cut(s) 95, 135, 152, 199, 261
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 8, 426
Eco24I GRGCYC 1 cut(s) 201
Eco47III AGCGCT 1 cut(s) 307
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 101
EcoT14I CCWWGG 2 cut(s) 8, 426
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 2 cut(s) 8, 426
FaeI CATG 1 cut(s) 300
FaiI YATR 5 cut(s) 92, 120, 248, 298, 354
FatI CATG 1 cut(s) 296
FauI CCCGC 1 cut(s) 34
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 3 cut(s) 19, 309, 405
FokI GGATG 2 cut(s) 67, 350
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 3 cut(s) 19, 309, 405
GlaI GCGC 1 cut(s) 307
GluI GCNGC 3 cut(s) 19, 309, 405
HaeII RGCGCY 1 cut(s) 309
HhaI GCGC 1 cut(s) 308
Hin1II CATG 1 cut(s) 300
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 2 cut(s) 157, 342
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 1 cut(s) 350
HpyCH4III ACNGT 3 cut(s) 188, 370, 397
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 4 cut(s) 21, 214, 311, 333
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 300
HspAI GCGC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 196, 225
LpnPI CCDG 2 cut(s) 255, 400
Lsp1109I GCAGC 3 cut(s) 5, 295, 416
LweI GCATC 1 cut(s) 207
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 4 cut(s) 166, 182, 273, 460
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 3 cut(s) 101, 252, 378
MnlI CCTC 2 cut(s) 95, 187
MseI TTAA 2 cut(s) 255, 314
MvnI CGCG 1 cut(s) 41
NlaIII CATG 1 cut(s) 300
NmuCI GTSAC 2 cut(s) 166, 182
PfeI GAWTC 2 cut(s) 157, 342
PkrI GCNGC 3 cut(s) 20, 310, 406
Psp124BI GAGCTC 1 cut(s) 201
SacI GAGCTC 1 cut(s) 201
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 2 cut(s) 255, 314
SatI GCNGC 3 cut(s) 19, 309, 405
SduI GDGCHC 1 cut(s) 201
SetI ASST 4 cut(s) 14, 201, 282, 467
SfaNI GCATC 1 cut(s) 207
Sse9I AATT 3 cut(s) 101, 252, 378
SsiI CCGC 1 cut(s) 41
SstI GAGCTC 1 cut(s) 201
StyI CCWWGG 2 cut(s) 8, 426
TaaI ACNGT 3 cut(s) 188, 370, 397
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 87, 348
TasI AATT 3 cut(s) 101, 252, 378
TfiI GAWTC 2 cut(s) 157, 342
Tru1I TTAA 2 cut(s) 255, 314
Tru9I TTAA 2 cut(s) 255, 314
TseFI GTSAC 2 cut(s) 166, 182
TseI GCWGC 3 cut(s) 18, 308, 404
Tsp45I GTSAC 2 cut(s) 166, 182
XapI RAATTY 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.