RLG00000006199

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008897
Physical Location & Seq
Reverse (-)
5159291 .. 5161474
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006199

Sequence Viewer

Length: 354 bp
ATGCAGGCAGATACCTTGGGTAATGAGGAGACTGTCTCACTGCAGTTGTTAATATCTCCTGAAATTGCAAAACCAAAAGTTTTAATGACTAAGGAGCTGCATTATCCATTAACGGTGTATAAGAGCTTAGTTGAGCAAGTGAAGCTGCAACATGATCCTAATCAAGAAGTCGTGGCTTCTCAATTGGAATACTTGCTCCGTGTGGACGCTGCTGTGAAGGAGAAGGTTGAGGAGATAATGCCCATTGCCACTGGCCACGAGCTAGAGGAGCTTATAGCTGAAGTTGAGGGAAAGAATATGCTGGAAATTGACCATCCCGAAGGTCCTTTCGGCACAAAGTTCAGTGTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

4.67

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 253
AcuI CTGAAG 1 cut(s) 300
AluBI AGCT 6 cut(s) 97, 126, 145, 262, 271, 278
AluI AGCT 6 cut(s) 97, 126, 145, 262, 271, 278
Alw26I GTCTC 2 cut(s) 23, 40
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 3 cut(s) 97, 145, 209
AspS9I GGNCC 1 cut(s) 323
AvaII GGWCC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 255
BauI CACGAG 1 cut(s) 257
BbvI GCAGC 3 cut(s) 84, 132, 196
BccI CCATC 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 23, 40
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 41
BisI GCNGC 3 cut(s) 98, 146, 210
BlsI GCNGC 3 cut(s) 99, 147, 211
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 159
BseMI GCAATG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 3 cut(s) 41, 245, 281
BseXI GCAGC 3 cut(s) 84, 132, 196
BshFI GGCC 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 23, 40
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 34, 115
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 90, 127
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 23, 40
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 142, 268
BstSFI CTRYAG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 84, 132, 196
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 3 cut(s) 38, 249, 349
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 215
CviAII CATG 1 cut(s) 152
CviJI RGCY 8 cut(s) 97, 126, 145, 176, 255, 262, 271, 278
CviKI_1 RGCY 8 cut(s) 97, 126, 145, 176, 255, 262, 271, 278
DdeI CTNAG 2 cut(s) 90, 127
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 155
FaiI YATR 5 cut(s) 120, 153, 275, 299, 352
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 98, 146, 210
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 3 cut(s) 98, 146, 210
FspBI CTAG 1 cut(s) 263
GluI GCNGC 3 cut(s) 98, 146, 210
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 3 cut(s) 59, 164, 317
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 3 cut(s) 211, 217, 314
HpyCH4III ACNGT 2 cut(s) 34, 115
HpyCH4V TGCA 5 cut(s) 4, 43, 68, 100, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 268
HpyF3I CTNAG 2 cut(s) 90, 127
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 3 cut(s) 94, 201, 268
LpnPI CCDG 3 cut(s) 72, 237, 287
Lsp1109I GCAGC 3 cut(s) 84, 132, 196
MaeI CTAG 1 cut(s) 263
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MfeI CAATTG 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 255
MluCI AATT 3 cut(s) 63, 182, 306
MluNI TGGCCA 1 cut(s) 255
MnlI CCTC 4 cut(s) 19, 223, 259, 280
Mox20I TGGCCA 1 cut(s) 255
MscI TGGCCA 1 cut(s) 255
MseI TTAA 3 cut(s) 50, 83, 110
Msp20I TGGCCA 1 cut(s) 255
MunI CAATTG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 142, 268
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 155
PkrI GCNGC 3 cut(s) 99, 147, 211
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
PspPI GGNCC 1 cut(s) 323
PspPPI RGGWCCY 1 cut(s) 323
PstI CTGCAG 1 cut(s) 45
SaqAI TTAA 3 cut(s) 50, 83, 110
SatI GCNGC 3 cut(s) 98, 146, 210
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 323
SetI ASST 9 cut(s) 17, 99, 128, 147, 228, 264, 273, 280, 325
SfcI CTRYAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 323
Sse9I AATT 3 cut(s) 63, 182, 306
SspMI CTAG 1 cut(s) 263
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 34, 115
TasI AATT 3 cut(s) 63, 182, 306
Tru1I TTAA 3 cut(s) 50, 83, 110
Tru9I TTAA 3 cut(s) 50, 83, 110
TscAI CASTG 3 cut(s) 45, 256, 349
TseI GCWGC 3 cut(s) 97, 145, 209
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 3 cut(s) 45, 256, 349
VpaK11BI GGWCC 1 cut(s) 323
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.