Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008897

Physical Location & Seq

Genomic Coordinates Forward (+)

39405190 .. 39419226

Gene Structure 14037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG308400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTAAGGACAATGCTCATATTCCTATGGGGTCTCGTACTCATGGCCAGGCAAGCCTTATGAATTGGGAGAAGAGAATGCAGTGGAGGATTTTAATGGAGGAAGCTGAGAATATGCAGAAGGACAACATGTGGACATCAGTGAACAACCAAAGGAATAAGCTTTTCCTGAGATGGTTGTGCAATGGACACCACTCTGAAGAAGAAGGTTGTGGAGAAAATGGCCATTGCCACCGGCCACGAGCTAGGAGCGTGCAGCTGAACTTGAGGGAAAGAATATCCTGGAAATCGACCATCCCAAAGGTCCTTTCGGCACAAAGAAGAAGCAGTGGCTTTTCAAGTGGTGTATCCAAGTACAGAGGAGTTGCCAGGTATTACTTTGCTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFG1_ATPase

Protein Analysis

129

Amino Acids

15.14

Weight (kDa)

10.33

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008897)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315271 RchiOBHm_Chr2g0157291 RchiOBHm_Chr5g0034521 RchiOBHm_Chr5g0043701 RchiOBHm_Chr5g0072341
rosa_laevigata	RLG00000006199 RLG00000014447
rosa_multiflora	Rmu_sc0000404.1_g000005 Rmu_sc0000663.1_g000020 Rmu_sc0006798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044040 Rroxscaffold_2G00127590 Rroxscaffold_2G00128420 Rroxscaffold_5G00373610 Rroxscaffold_6G00425320
rosa_rugosa	Rorug07G0259600
rosa_samantha	Rh1AG066800 Rh1CG269600 Rh2CG273500 Rh5AG473900 Rh5BG015900 Rh5CG271900 Rh5DG308400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	3 cut(s)	46, 223, 236
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	40, 356
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	339
AjnI	CCWGG	3 cut(s)	48, 281, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	4 cut(s)	107, 163, 245, 259
AluI	AGCT	4 cut(s)	107, 163, 245, 259
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	3 cut(s)	46, 223, 236
ApeKI	GCWGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	304
BalI	TGGCCA	2 cut(s)	48, 225
BauI	CACGAG	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	168, 302
BciT130I	CCWGG	3 cut(s)	50, 283, 370
BciVI	GTATCC	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	2 cut(s)	246, 384
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	3 cut(s)	50, 283, 370
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmrFI	CCNGG	3 cut(s)	50, 283, 370
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	234
Bse3DI	GCAATG	2 cut(s)	190, 226
BseBI	CCWGG	3 cut(s)	50, 283, 370
BseGI	GGATG	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	190, 226
BseMII	CTCAG	2 cut(s)	99, 161
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	275
BshFI	GGCC	3 cut(s)	48, 225, 238
BsiSI	CCGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	3 cut(s)	48, 225, 238
Bso31I	GGTCTC	1 cut(s)	39
BspANI	GGCC	3 cut(s)	48, 225, 238
BspCNI	CTCAG	2 cut(s)	100, 162
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	190, 226
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	3 cut(s)	50, 283, 370
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	55, 254
BstDEI	CTNAG	3 cut(s)	6, 108, 170
BstF5I	GGATG	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	3 cut(s)	50, 283, 370
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	3 cut(s)	48, 281, 368
BstV1I	GCAGC	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	48, 225, 238
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	2 cut(s)	89, 334
BtsIMutI	CAGTG	3 cut(s)	89, 147, 334
Cac8I	GCNNGC	2 cut(s)	55, 254
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	39, 355
CviAII	CATG	2 cut(s)	44, 130
CviQI	GTAC	2 cut(s)	39, 355
DdeI	CTNAG	3 cut(s)	6, 108, 170
EaeI	YGGCCR	3 cut(s)	46, 223, 236
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	3 cut(s)	48, 281, 368
FaeI	CATG	2 cut(s)	47, 133
FaiI	YATR	6 cut(s)	21, 29, 45, 62, 116, 131
FatI	CATG	2 cut(s)	43, 129
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	2 cut(s)	246, 384
GluI	GCNGC	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	48, 225, 238
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	2 cut(s)	47, 133
HindIII	AAGCTT	1 cut(s)	161
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	135, 145
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	135, 145
HpyAV	CCTTC	2 cut(s)	115, 200
HpyCH4V	TGCA	4 cut(s)	82, 118, 183, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	3 cut(s)	6, 108, 170
Hsp92II	CATG	2 cut(s)	47, 133
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	8 cut(s)	35, 62, 182, 248, 268, 295, 355, 382
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	246, 384
MboII	GAAGA	4 cut(s)	85, 212, 215, 333
MlsI	TGGCCA	2 cut(s)	48, 225
MluCI	AATT	1 cut(s)	64
MluNI	TGGCCA	2 cut(s)	48, 225
MnlI	CCTC	4 cut(s)	81, 94, 261, 353
Mox20I	TGGCCA	2 cut(s)	48, 225
MscI	TGGCCA	2 cut(s)	48, 225
MseI	TTAA	1 cut(s)	95
Msp20I	TGGCCA	2 cut(s)	48, 225
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	3 cut(s)	50, 283, 370
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	3 cut(s)	50, 283, 370
MwoI	GCNNNNNNNGC	1 cut(s)	54
NlaIII	CATG	2 cut(s)	47, 133
NspI	RCATGY	1 cut(s)	133
PciI	ACATGT	1 cut(s)	129
PctI	GAATGC	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	258
PpuMI	RGGWCCY	1 cut(s)	304
PscI	ACATGT	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	3 cut(s)	48, 281, 368
PspGI	CCWGG	3 cut(s)	48, 281, 368
PspPI	GGNCC	1 cut(s)	304
PspPPI	RGGWCCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	40, 356
RsaNI	GTAC	2 cut(s)	39, 355
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	257
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	3 cut(s)	50, 283, 370
SetI	ASST	7 cut(s)	109, 165, 211, 247, 261, 306, 374
SinI	GGWCC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	246, 384
StyD4I	CCNGG	3 cut(s)	48, 281, 368
TaqI	TCGA	1 cut(s)	290
TasI	AATT	1 cut(s)	64
TatI	WGTACW	1 cut(s)	354
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	3 cut(s)	89, 147, 334
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	3 cut(s)	89, 147, 334
VpaK11BI	GGWCC	1 cut(s)	304
XceI	RCATGY	1 cut(s)	133
XspI	CTAG	2 cut(s)	246, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.