Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008897

Physical Location & Seq

Genomic Coordinates Forward (+)

53271250 .. 53271985

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCGTCTATGGAGATCGACAATCCCAAGCCAAACACCTCCAATCAGTTTGGTCATTCTCCGATCCATTCCCAAAAGACGAAGATGAAGATGAAGATGCCGGAAGAGTACGATCCAGCCAGGCTAAACGACTACGCGGAGTACAGGAGGGAGAGAAAGAAGAAGGCGATGGAAGCTGAGTCGGTCGACAATAAGCAGGCAGTCAGGTACCTCATAAGTGTAGTCCCTAGGACCTCATGGATCCAACTTCTAGACACTTCGTTGGTGTGGACTCTAGGATTTATAGTTGACTCTTCATTGACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

103

Amino Acids

11.82

Weight (kDa)

8.93

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008897)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315271 RchiOBHm_Chr2g0157291 RchiOBHm_Chr5g0034521 RchiOBHm_Chr5g0043701 RchiOBHm_Chr5g0072341
rosa_laevigata	RLG00000006199 RLG00000014447
rosa_multiflora	Rmu_sc0000404.1_g000005 Rmu_sc0000663.1_g000020 Rmu_sc0006798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044040 Rroxscaffold_2G00127590 Rroxscaffold_2G00128420 Rroxscaffold_5G00373610 Rroxscaffold_6G00425320
rosa_rugosa	Rorug07G0259600
rosa_samantha	Rh1AG066800 Rh1CG269600 Rh2CG273500 Rh5AG473900 Rh5BG015900 Rh5CG271900 Rh5DG308400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	1 cut(s)	137
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	4 cut(s)	58, 107, 235, 248
AfaI	GTAC	3 cut(s)	110, 143, 209
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
AlwI	GGATC	4 cut(s)	58, 107, 235, 248
Asp718I	GGTACC	1 cut(s)	207
AspA2I	CCTAGG	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	231
AvrII	CCTAGG	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	207
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	121
BfaI	CTAG	3 cut(s)	228, 251, 275
BlnI	CCTAGG	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	209, 242
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	209
Bsp143I	GATC	4 cut(s)	15, 63, 112, 240
BspACI	CCGC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	137
BspHI	TCATGA	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	209, 242
BspPI	GGATC	4 cut(s)	58, 107, 235, 248
BspT107I	GGYRCC	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	4 cut(s)	15, 63, 112, 240
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	99, 298
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	137
BstKTI	GATC	4 cut(s)	18, 66, 115, 243
BstMBI	GATC	4 cut(s)	15, 63, 112, 240
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstUI	CGCG	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	198
CciI	TCATGA	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	109, 142, 208
CviAII	CATG	2 cut(s)	237, 306
CviJI	RGCY	4 cut(s)	31, 119, 124, 176
CviKI_1	RGCY	4 cut(s)	31, 119, 124, 176
CviQI	GTAC	3 cut(s)	109, 142, 208
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	4 cut(s)	17, 65, 114, 242
DpnII	GATC	4 cut(s)	15, 63, 112, 240
Eam1104I	CTCTTC	2 cut(s)	99, 298
EarI	CTCTTC	2 cut(s)	99, 298
Eco130I	CCWWGG	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	240, 309
FaiI	YATR	5 cut(s)	11, 215, 238, 284, 307
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	236, 305
FblI	GTMKAC	1 cut(s)	186
FspBI	CTAG	3 cut(s)	228, 251, 275
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	240, 309
HincII	GTYRAC	2 cut(s)	187, 289
HindII	GTYRAC	2 cut(s)	187, 289
HinfI	GANTC	3 cut(s)	179, 271, 290
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	3 cut(s)	187, 270, 289
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	251, 306
Hpy8I	GTNNAC	3 cut(s)	187, 270, 289
HpyAV	CCTTC	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	240, 309
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	15, 63, 112, 240
LpnPI	CCDG	7 cut(s)	106, 114, 129, 130, 133, 182, 190
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	3 cut(s)	228, 251, 275
MalI	GATC	4 cut(s)	17, 65, 114, 242
MboI	GATC	4 cut(s)	15, 63, 112, 240
MboII	GAAGA	6 cut(s)	94, 100, 106, 116, 172, 285
MflI	RGATCY	1 cut(s)	240
MlyI	GAGTC	3 cut(s)	188, 265, 284
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	49, 141, 221, 244
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	4 cut(s)	15, 63, 112, 240
NlaIII	CATG	2 cut(s)	240, 309
NlaIV	GGNNCC	2 cut(s)	209, 242
PagI	TCATGA	1 cut(s)	305
PleI	GAGTC	3 cut(s)	187, 265, 284
PpsI	GAGTC	3 cut(s)	187, 265, 284
PpuMI	RGGWCCY	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	209, 242
PspPI	GGNCC	1 cut(s)	231
PspPPI	RGGWCCY	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	3 cut(s)	110, 143, 209
RsaNI	GTAC	3 cut(s)	109, 142, 208
SalI	GTCGAC	1 cut(s)	185
Sau3AI	GATC	4 cut(s)	15, 63, 112, 240
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	3 cut(s)	188, 265, 284
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	5 cut(s)	41, 178, 209, 213, 236
SfaNI	GCATC	1 cut(s)	87
SinI	GGWCC	1 cut(s)	231
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	3 cut(s)	228, 251, 275
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	227
TaqI	TCGA	2 cut(s)	18, 186
TaqII	GACCGA	1 cut(s)	172
TatI	WGTACW	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	101, 107, 285, 294
VpaK11BI	GGWCC	1 cut(s)	231
XbaI	TCTAGA	1 cut(s)	250
XmaJI	CCTAGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	3 cut(s)	228, 251, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.