Rroxscaffold_1G00044040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008897
Physical Location & Seq
Reverse (-)
62777444 .. 62779489
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044040.1

Sequence Viewer

Length: 324 bp
ATGGAGGACAGAGGAACTAGATCTGTTTTCTCTCTCCTCCGACACCCACTTCCGGTCACCACCGTGACTCACCTCCACCGTCACAGACCTCACCGACCTCCGACGAGTTTAACGCAGCCTCGAGGAGTAAGTGTAGGTCAGGGAATTTCGACAAGGCATGGAGAAATTTGTTTAAATCGCGGTGGCCGGAGCTTGGCAGTAGGATTGAACCTCCTGACTGGCAGCAGATATATTGGGAAACGCATCTGCAAAACACCTATTGAGGAACAGCAAATAGCAGAGCTTGGAACTAAGGTGGATAAGATCCAAGGAGCATATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.88

Weight (kDa)

10.6

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 120
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 298
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 144, 165
AfiI CCNNNNNNNGG 2 cut(s) 52, 193
AgsI TTSAA 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 2 cut(s) 192, 283
AluI AGCT 2 cut(s) 192, 283
AlwI GGATC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 115, 222
ApoI RAATTY 2 cut(s) 144, 165
AsuHPI GGTGA 3 cut(s) 49, 62, 83
AvaI CYCGRG 1 cut(s) 120
BbvI GCAGC 2 cut(s) 127, 234
BfaI CTAG 2 cut(s) 18, 322
BglII AGATCT 1 cut(s) 20
BisI GCNGC 2 cut(s) 116, 223
BlsI GCNGC 2 cut(s) 117, 224
BmeT110I CYCGRG 1 cut(s) 120
BmsI GCATC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 307
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 193
Bse1I ACTGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 52, 193
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 26, 138
BseXI GCAGC 2 cut(s) 127, 234
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 2 cut(s) 53, 187
BslI CCNNNNNNNGG 2 cut(s) 52, 193
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 120
Bsp143I GATC 2 cut(s) 20, 303
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 1 cut(s) 180
BspPI GGATC 1 cut(s) 298
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 2 cut(s) 20, 303
BssT1I CCWWGG 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 64, 80
BstDEI CTNAG 1 cut(s) 291
BstEII GGTNACC 1 cut(s) 55
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 2 cut(s) 23, 306
BstMBI GATC 2 cut(s) 20, 303
BstPI GGTNACC 1 cut(s) 55
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 127, 234
BstX2I RGATCY 2 cut(s) 20, 303
BstYI RGATCY 2 cut(s) 20, 303
BsuRI GGCC 1 cut(s) 186
CviAII CATG 1 cut(s) 158
CviJI RGCY 4 cut(s) 118, 186, 192, 283
CviKI_1 RGCY 4 cut(s) 118, 186, 192, 283
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 22, 305
DpnII GATC 2 cut(s) 20, 303
DraI TTTAAA 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 120
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 1 cut(s) 161
FaiI YATR 3 cut(s) 159, 231, 316
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 116, 223
Fsp4HI GCNGC 2 cut(s) 116, 223
FspBI CTAG 2 cut(s) 18, 322
GluI GCNGC 2 cut(s) 116, 223
HaeIII GGCC 1 cut(s) 186
HapII CCGG 2 cut(s) 53, 187
Hin1II CATG 1 cut(s) 161
HinfI GANTC 1 cut(s) 67
HpaII CCGG 2 cut(s) 53, 187
HphI GGTGA 3 cut(s) 49, 62, 83
Hpy188I TCNGA 2 cut(s) 41, 102
Hpy188III TCNNGA 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 64, 80
HpyCH4V TGCA 1 cut(s) 249
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 1 cut(s) 161
Kzo9I GATC 2 cut(s) 20, 303
LmnI GCTCC 2 cut(s) 189, 311
LpnPI CCDG 5 cut(s) 66, 125, 200, 204, 227
Lsp1109I GCAGC 2 cut(s) 127, 234
LweI GCATC 1 cut(s) 252
MaeI CTAG 2 cut(s) 18, 322
MaeIII GTNAC 3 cut(s) 55, 64, 80
MalI GATC 2 cut(s) 22, 305
MboI GATC 2 cut(s) 20, 303
MflI RGATCY 2 cut(s) 20, 303
MluCI AATT 2 cut(s) 144, 165
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 2 cut(s) 64, 125
MnlI CCTC 9 cut(s) 5, 47, 83, 99, 108, 116, 129, 221, 256
MseI TTAA 2 cut(s) 110, 173
MslI CAYNNNNRTG 1 cut(s) 62
MspI CCGG 2 cut(s) 53, 187
MvnI CGCG 1 cut(s) 180
NdeII GATC 2 cut(s) 20, 303
NlaIII CATG 1 cut(s) 161
NmuCI GTSAC 3 cut(s) 55, 64, 80
OliI CACNNNNGTG 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 120
PkrI GCNGC 2 cut(s) 117, 224
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspEI GGTNACC 1 cut(s) 55
PspXI VCTCGAGB 1 cut(s) 120
PsuI RGATCY 2 cut(s) 20, 303
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 2 cut(s) 110, 173
SatI GCNGC 2 cut(s) 116, 223
Sau3AI GATC 2 cut(s) 20, 303
SchI GAGTC 1 cut(s) 61
SetI ASST 9 cut(s) 75, 91, 100, 139, 194, 213, 259, 285, 297
SfaNI GCATC 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 2 cut(s) 144, 165
SsiI CCGC 1 cut(s) 180
SspMI CTAG 2 cut(s) 18, 322
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 64, 80
TaqI TCGA 2 cut(s) 121, 149
TasI AATT 2 cut(s) 144, 165
Tru1I TTAA 2 cut(s) 110, 173
Tru9I TTAA 2 cut(s) 110, 173
TseFI GTSAC 3 cut(s) 55, 64, 80
TseI GCWGC 2 cut(s) 115, 222
Tsp45I GTSAC 3 cut(s) 55, 64, 80
XapI RAATTY 2 cut(s) 144, 165
XhoI CTCGAG 1 cut(s) 120
XspI CTAG 2 cut(s) 18, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.