Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008897

Physical Location & Seq

Genomic Coordinates Reverse (-)

64198849 .. 64200937

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCCTTCTCCCCCAAATCGATTCAGCCTTATCCGAGGTCTGGAAGCGGTCGTAGGCAACAACAATTTGATATCTCCCCCAATTTCGAAGCGGTGTCTCCGCCCATTACTGCCTATCTCTGCCTCCCCTCTCTCTCATATCCCAGCTCCTCTTCTCTGCCTCCCTCTCTCTCATCTCCAAATTGTTTTGGTTTAATGGAGGACAGAGGAACTAGATCTGTTTTCTCTCTCCTCCGACACCCACTTCCAGTCACCACCGTGACTCACCTCCACCGTCACAGACCTCACCGACCTCCGACGAGTTTAACGCAGCCTCGAGGAGTAAGTGTAGGTCAGGGAATTTCGACAAGGCATGGAGAAATTTGTTTAAATTGCGGTGGCCGGAGCTTGGCAGTAGGATTGAACCTCCTGACTGGCAGCAGATATATTGGGAAACGCATCTGCAAAACACCTATTGAGGAACAGCAAATAGCAGAGCTTGGAACTAAGGTGGATAAGTTCCAAGGAGCATATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.85

Weight (kDa)

9.85

Isoelectric Point (pI)

66.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008897)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315271 RchiOBHm_Chr2g0157291 RchiOBHm_Chr5g0034521 RchiOBHm_Chr5g0043701 RchiOBHm_Chr5g0072341
rosa_laevigata	RLG00000006199 RLG00000014447
rosa_multiflora	Rmu_sc0000404.1_g000005 Rmu_sc0000663.1_g000020 Rmu_sc0006798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044040 Rroxscaffold_2G00127590 Rroxscaffold_2G00128420 Rroxscaffold_5G00373610 Rroxscaffold_6G00425320
rosa_rugosa	Rorug07G0259600
rosa_samantha	Rh1AG066800 Rh1CG269600 Rh2CG273500 Rh5AG473900 Rh5BG015900 Rh5CG271900 Rh5DG308400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	315
AciI	CCGC	4 cut(s)	48, 92, 101, 375
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	339, 360
AfiI	CCNNNNNNNGG	2 cut(s)	41, 388
AgsI	TTSAA	1 cut(s)	403
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	147, 387, 478
AluI	AGCT	3 cut(s)	147, 387, 478
Alw26I	GTCTC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	310, 417
ApoI	RAATTY	2 cut(s)	339, 360
AsuHPI	GGTGA	3 cut(s)	244, 257, 278
AsuII	TTCGAA	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	322, 429
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	213, 517
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	2 cut(s)	311, 418
BlsI	GCNGC	2 cut(s)	312, 419
BmeT110I	CYCGRG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	35, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 388
Bse1I	ACTGG	2 cut(s)	248, 418
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	35, 502
BseLI	CCNNNNNNNGG	2 cut(s)	41, 388
BseNI	ACTGG	2 cut(s)	248, 418
BseRI	GAGGAG	3 cut(s)	139, 221, 333
BseXI	GCAGC	2 cut(s)	322, 429
BseYI	CCCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	41, 388
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	381
BsoBI	CYCGRG	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	4 cut(s)	48, 92, 101, 375
BspANI	GGCC	1 cut(s)	381
BspDI	ATCGAT	1 cut(s)	20
BspT104I	TTCGAA	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	248, 418
BssECI	CCNNGG	2 cut(s)	35, 502
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	259, 275
Bst6I	CTCTTC	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	486
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	215
BstMCI	CGRYCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	322, 429
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	381
BsuTUI	ATCGAT	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	20
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	6 cut(s)	28, 147, 313, 381, 387, 478
CviKI_1	RGCY	6 cut(s)	28, 147, 313, 381, 387, 478
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	502
Eco32I	GATATC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	315
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	1 cut(s)	356
FaiI	YATR	4 cut(s)	139, 354, 426, 511
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	311, 418
Fsp4HI	GCNGC	2 cut(s)	311, 418
FspBI	CTAG	2 cut(s)	213, 517
GluI	GCNGC	2 cut(s)	311, 418
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	382
Hin1II	CATG	1 cut(s)	356
HinfI	GANTC	2 cut(s)	22, 262
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	3 cut(s)	244, 257, 278
Hpy188I	TCNGA	3 cut(s)	36, 236, 297
Hpy188III	TCNNGA	2 cut(s)	42, 409
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	259, 275
HpyCH4V	TGCA	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	486
Hsp92II	CATG	1 cut(s)	356
Kzo9I	GATC	1 cut(s)	215
LmnI	GCTCC	3 cut(s)	152, 384, 506
LpnPI	CCDG	7 cut(s)	27, 157, 261, 320, 395, 399, 422
Lsp1109I	GCAGC	2 cut(s)	322, 429
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	2 cut(s)	213, 517
MaeIII	GTNAC	3 cut(s)	250, 259, 275
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	1 cut(s)	144
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	6 cut(s)	65, 82, 181, 339, 360, 370
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	2 cut(s)	259, 320
MseI	TTAA	3 cut(s)	194, 305, 368
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	1 cut(s)	382
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	356
NmuCI	GTSAC	3 cut(s)	250, 259, 275
NspV	TTCGAA	1 cut(s)	87
OliI	CACNNNNGTG	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	312, 419
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	143
PspXI	VCTCGAGB	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	194, 305, 368
SatI	GCNGC	2 cut(s)	311, 418
Sau3AI	GATC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	447
Sfr274I	CTCGAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	87
SlaI	CTCGAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	6 cut(s)	65, 82, 181, 339, 360, 370
SsiI	CCGC	4 cut(s)	48, 92, 101, 375
SspMI	CTAG	2 cut(s)	213, 517
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	259, 275
TaqI	TCGA	4 cut(s)	20, 87, 316, 344
TasI	AATT	6 cut(s)	65, 82, 181, 339, 360, 370
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	3 cut(s)	194, 305, 368
Tru9I	TTAA	3 cut(s)	194, 305, 368
TseFI	GTSAC	3 cut(s)	250, 259, 275
TseI	GCWGC	2 cut(s)	310, 417
Tsp45I	GTSAC	3 cut(s)	250, 259, 275
XapI	RAATTY	2 cut(s)	339, 360
XhoI	CTCGAG	1 cut(s)	315
XspI	CTAG	2 cut(s)	213, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.