Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008897

Physical Location & Seq

Genomic Coordinates Reverse (-)

54800056 .. 54802668

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGACCACTCTAACAAAAGAAGGATACTTGGCCTCTCTAAGAAGAAGAAGCACGGGCTTTTCAAGTCGTCTATCCAAATACAGAGGAGTTGCAAGTGTCATTACGCAGTATAAGAGCTTAGATAAGCAAGGGAAGCTGCAACATGATCCGAACCAAGGTTATTTATATGGAATTGATTTCACTGGCCATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

64

Amino Acids

7.26

Weight (kDa)

9.82

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008897)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315271 RchiOBHm_Chr2g0157291 RchiOBHm_Chr5g0034521 RchiOBHm_Chr5g0043701 RchiOBHm_Chr5g0072341
rosa_laevigata	RLG00000006199 RLG00000014447
rosa_multiflora	Rmu_sc0000404.1_g000005 Rmu_sc0000663.1_g000020 Rmu_sc0006798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044040 Rroxscaffold_2G00127590 Rroxscaffold_2G00128420 Rroxscaffold_5G00373610 Rroxscaffold_6G00425320
rosa_rugosa	Rorug07G0259600
rosa_samantha	Rh1AG066800 Rh1CG269600 Rh2CG273500 Rh5AG473900 Rh5BG015900 Rh5CG271900 Rh5DG308400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	63
AluBI	AGCT	2 cut(s)	117, 136
AluI	AGCT	2 cut(s)	117, 136
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	30, 184
ApeKI	GCWGC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	17
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	123
BshFI	GGCC	2 cut(s)	32, 186
BslI	CCNNNNNNNGG	1 cut(s)	155
BsnI	GGCC	2 cut(s)	32, 186
Bsp143I	GATC	1 cut(s)	145
BspANI	GGCC	2 cut(s)	32, 186
BspPI	GGATC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	38, 118
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	32, 186
BtsIMutI	CAGTG	1 cut(s)	180
CviAII	CATG	2 cut(s)	143, 188
CviJI	RGCY	5 cut(s)	32, 57, 117, 136, 186
CviKI_1	RGCY	5 cut(s)	32, 57, 117, 136, 186
DdeI	CTNAG	2 cut(s)	38, 118
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	146, 191
FaiI	YATR	5 cut(s)	111, 144, 166, 168, 189
FatI	CATG	2 cut(s)	142, 187
Fnu4HI	GCNGC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	32, 186
Hin1II	CATG	2 cut(s)	146, 191
Hpy188I	TCNGA	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	92, 139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	2 cut(s)	38, 118
Hsp92II	CATG	2 cut(s)	146, 191
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	1 cut(s)	168
Lsp1109I	GCAGC	1 cut(s)	123
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	54, 57
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	1 cut(s)	171
MluNI	TGGCCA	1 cut(s)	186
MnlI	CCTC	2 cut(s)	43, 77
Mox20I	TGGCCA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	146, 191
PkrI	GCNGC	1 cut(s)	138
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	145
SetI	ASST	3 cut(s)	119, 138, 160
SgeI	CNNG	8 cut(s)	40, 64, 66, 75, 105, 140, 155, 167
Sse9I	AATT	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	154
TasI	AATT	1 cut(s)	171
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	136
TspRI	CASTG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.