Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000663.1

Orthogroup ID

OG0008897

Physical Location & Seq

Genomic Coordinates Forward (+)

77731 .. 78789

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000663.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgcactccaccacatgcaagtcaaacagtggccaaagtcacagaaaaatgcagaaacattggagatcgacaatcccaagccaaacagagaaccagaaccagacgatgtcgtctatggagatcgacaatcccaagctgatgtcatctatggagatcgataatcccaagccaaacacctctaatcagtttggtagttctccgatccattcccagaagacgaagatgaagatgatgatgccggaagagtatgatccagccaggtcgaacgactacgcggagtacaggagggagagaaagaagaaggcgatagagggtgaggcatggaacttgtggaatgaaggccggggattggagttggtagatgaaatattgggcgattcgtattcctcattggaagtatttaaatgcgtgcatatcgggcttttgtgtgtacaagacaatgctgtggataggccaaccatggcggatatagctttgatgttaactagcgagaaagatggtccacaacctaagctgcttgtattcactatccaaaactcagcttatcatcctcaaccacactttgagaatacaaattcctccaaaaatgaagctagcattacaatgattgaaggacgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

206

Amino Acids

23.48

Weight (kDa)

6.17

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008897)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315271 RchiOBHm_Chr2g0157291 RchiOBHm_Chr5g0034521 RchiOBHm_Chr5g0043701 RchiOBHm_Chr5g0072341
rosa_laevigata	RLG00000006199 RLG00000014447
rosa_multiflora	Rmu_sc0000404.1_g000005 Rmu_sc0000663.1_g000020 Rmu_sc0006798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044040 Rroxscaffold_2G00127590 Rroxscaffold_2G00128420 Rroxscaffold_5G00373610 Rroxscaffold_6G00425320
rosa_rugosa	Rorug07G0259600
rosa_samantha	Rh1AG066800 Rh1CG269600 Rh2CG273500 Rh5AG473900 Rh5BG015900 Rh5CG271900 Rh5DG308400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
AccII	CGCG	1 cut(s)	275
AciI	CCGC	2 cut(s)	275, 464
AclWI	GGATC	2 cut(s)	196, 245
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	574
AfaI	GTAC	2 cut(s)	281, 432
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	1 cut(s)	611
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	5 cut(s)	136, 473, 514, 542, 593
AluI	AGCT	5 cut(s)	136, 473, 514, 542, 593
AlwI	GGATC	2 cut(s)	196, 245
AoxI	GGCC	3 cut(s)	31, 340, 452
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	326
AsuNHI	GCTAGC	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	2 cut(s)	486, 594
BisI	GCNGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	516
Bme1390I	CCNGG	2 cut(s)	259, 344
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmrFI	CCNGG	2 cut(s)	259, 344
BmsI	GCATC	1 cut(s)	225
BmtI	GCTAGC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	343, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	259
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	343, 459
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	552
BseXI	GCAGC	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	3 cut(s)	33, 342, 454
BshVI	ATCGAT	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	239, 343
BslI	CCNNNNNNNGG	1 cut(s)	349
BsnI	GGCC	3 cut(s)	33, 342, 454
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	5 cut(s)	65, 120, 153, 201, 250
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	2 cut(s)	275, 464
BspANI	GGCC	3 cut(s)	33, 342, 454
BspCNI	CTCAG	1 cut(s)	551
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	597
BspPI	GGATC	2 cut(s)	196, 245
BsrGI	TGTACA	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	343, 459
BssMI	GATC	5 cut(s)	65, 120, 153, 201, 250
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	410, 595
BstDEI	CTNAG	2 cut(s)	510, 538
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	5 cut(s)	68, 123, 156, 204, 253
BstMBI	GATC	5 cut(s)	65, 120, 153, 201, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 470
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	257, 342
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	33, 342, 454
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	410, 595
Cfr13I	GGNCC	1 cut(s)	500
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	280, 431
CviAII	CATG	3 cut(s)	15, 321, 460
CviQI	GTAC	2 cut(s)	280, 431
DdeI	CTNAG	2 cut(s)	510, 538
DpnI	GATC	5 cut(s)	67, 122, 155, 203, 252
DpnII	GATC	5 cut(s)	65, 120, 153, 201, 250
DraI	TTTAAA	1 cut(s)	403
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	18, 324, 463
FaiI	YATR	8 cut(s)	16, 116, 149, 249, 322, 414, 461, 470
FatI	CATG	3 cut(s)	14, 320, 459
Fnu4HI	GCNGC	1 cut(s)	515
FokI	GGATG	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	515
FspBI	CTAG	2 cut(s)	486, 594
GluI	GCNGC	1 cut(s)	515
HaeIII	GGCC	3 cut(s)	33, 342, 454
HapII	CCGG	2 cut(s)	239, 343
Hin1II	CATG	3 cut(s)	18, 324, 463
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	1 cut(s)	377
HpaI	GTTAAC	1 cut(s)	483
HpaII	CCGG	2 cut(s)	239, 343
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	431, 483, 503
Hpy188I	TCNGA	1 cut(s)	201
Hpy8I	GTNNAC	3 cut(s)	431, 483, 503
HpyAV	CCTTC	3 cut(s)	295, 332, 605
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	4 cut(s)	4, 18, 52, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 470
HpyF3I	CTNAG	2 cut(s)	510, 538
Hsp92II	CATG	3 cut(s)	18, 324, 463
KspAI	GTTAAC	1 cut(s)	483
Kzo9I	GATC	5 cut(s)	65, 120, 153, 201, 250
LpnPI	CCDG	9 cut(s)	107, 113, 224, 244, 252, 267, 268, 271, 356
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	486, 594
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	5 cut(s)	67, 122, 155, 203, 252
MboI	GATC	5 cut(s)	65, 120, 153, 201, 250
MboII	GAAGA	5 cut(s)	226, 232, 238, 254, 310
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	1 cut(s)	574
MluNI	TGGCCA	1 cut(s)	33
MnlI	CCTC	7 cut(s)	187, 279, 304, 310, 397, 561, 589
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	2 cut(s)	402, 482
MslI	CAYNNNNRTG	1 cut(s)	602
Msp20I	TGGCCA	1 cut(s)	33
MspI	CCGG	2 cut(s)	239, 343
MspR9I	CCNGG	2 cut(s)	259, 344
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	418, 470
NciI	CCSGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	5 cut(s)	65, 120, 153, 201, 250
NheI	GCTAGC	1 cut(s)	593
NlaIII	CATG	3 cut(s)	18, 324, 463
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	377
PflFI	GACNNNGTC	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	500
PsyI	GACNNNGTC	1 cut(s)	106
RsaI	GTAC	2 cut(s)	281, 432
RsaNI	GTAC	2 cut(s)	280, 431
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	402, 482
SatI	GCNGC	1 cut(s)	515
Sau3AI	GATC	5 cut(s)	65, 120, 153, 201, 250
Sau96I	GGNCC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	259, 344
SetI	ASST	8 cut(s)	138, 179, 263, 475, 511, 516, 544, 595
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	1 cut(s)	500
SmiI	ATTTAAAT	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	602
Sse9I	AATT	1 cut(s)	574
SsiI	CCGC	2 cut(s)	275, 464
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	2 cut(s)	486, 594
StyD4I	CCNGG	2 cut(s)	257, 342
StyI	CCWWGG	1 cut(s)	459
SwaI	ATTTAAAT	1 cut(s)	403
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	4 cut(s)	68, 123, 156, 263
TasI	AATT	1 cut(s)	574
TatI	WGTACW	2 cut(s)	279, 430
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	402, 482
Tru9I	TTAA	2 cut(s)	402, 482
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	4 cut(s)	239, 351, 378, 603
TspRI	CASTG	1 cut(s)	34
Tth111I	GACNNNGTC	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	574
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	2 cut(s)	486, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.