Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008897

Physical Location & Seq

Genomic Coordinates Forward (+)

11204502 .. 11204843

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG066800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGATCGACAATCCCAAGCCGATATCGTCCATGGAGATCGACAATCCCAATCTGATGTCGTCTATGGAGATCGATAATCCCAAGCCGAACACCTCCAATCAGTTTGGCCATTCTCCGATCCATTCCTTTGGGGAGAGATCAAAACGGAAAAACAAAACCGAAAAATCCCAGAAGACGAAGATGAAGATGCCAGAAGAGTACGATCTAGCCAGGTCGAACGACTGCACAGAGTACAGGAGGGAGGGAGAGAAGAAGGCGATGGAGGCTGAGGTGAGGAGAGAGCTCGATCGGAGAAGACAGGAGGAGGAGAGGACAGAGAGGGAGGAGAGAAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

113

Amino Acids

13.54

Weight (kDa)

7.84

Isoelectric Point (pI)

93.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008897)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315271 RchiOBHm_Chr2g0157291 RchiOBHm_Chr5g0034521 RchiOBHm_Chr5g0043701 RchiOBHm_Chr5g0072341
rosa_laevigata	RLG00000006199 RLG00000014447
rosa_multiflora	Rmu_sc0000404.1_g000005 Rmu_sc0000663.1_g000020 Rmu_sc0006798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044040 Rroxscaffold_2G00127590 Rroxscaffold_2G00128420 Rroxscaffold_5G00373610 Rroxscaffold_6G00425320
rosa_rugosa	Rorug07G0259600
rosa_samantha	Rh1AG066800 Rh1CG269600 Rh2CG273500 Rh5AG473900 Rh5BG015900 Rh5CG271900 Rh5DG308400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	109
AfaI	GTAC	2 cut(s)	203, 236
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	182, 304
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	214
BfaI	CTAG	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	180
BpiI	GAAGAC	2 cut(s)	182, 304
Bpu10I	CCTNAGC	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	214
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	4 cut(s)	292, 320, 323, 341
BsgI	GTGCAG	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	7 cut(s)	6, 39, 72, 120, 140, 205, 289
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	75
BspPI	GGATC	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	7 cut(s)	6, 39, 72, 120, 140, 205, 289
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	33
BstKTI	GATC	7 cut(s)	9, 42, 75, 123, 143, 208, 292
BstMBI	GATC	7 cut(s)	6, 39, 72, 120, 140, 205, 289
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstV2I	GAAGAC	2 cut(s)	182, 304
BstXI	CCANNNNNNTGG	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	202, 235
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	6 cut(s)	22, 88, 111, 212, 269, 286
CviKI_1	RGCY	6 cut(s)	22, 88, 111, 212, 269, 286
CviQI	GTAC	2 cut(s)	202, 235
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	7 cut(s)	8, 41, 74, 122, 142, 207, 291
DpnII	GATC	7 cut(s)	6, 39, 72, 120, 140, 205, 289
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	212
EcoRV	GATATC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	37
FaiI	YATR	2 cut(s)	35, 68
FatI	CATG	1 cut(s)	33
FriOI	GRGCYC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	37
HphI	GGTGA	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	57, 120, 294
HpyAV	CCTTC	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	7 cut(s)	6, 39, 72, 120, 140, 205, 289
LpnPI	CCDG	6 cut(s)	185, 199, 207, 223, 226, 287
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	209
MalI	GATC	7 cut(s)	8, 41, 74, 122, 142, 207, 291
MboI	GATC	7 cut(s)	6, 39, 72, 120, 140, 205, 289
MboII	GAAGA	6 cut(s)	187, 193, 199, 209, 265, 309
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	111
MluNI	TGGCCA	1 cut(s)	111
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	7 cut(s)	6, 39, 72, 120, 140, 205, 289
NlaIII	CATG	1 cut(s)	37
Ple19I	CGATCG	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	203, 236
RsaNI	GTAC	2 cut(s)	202, 235
SacI	GAGCTC	1 cut(s)	288
Sau3AI	GATC	7 cut(s)	6, 39, 72, 120, 140, 205, 289
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	4 cut(s)	98, 218, 276, 288
SfaNI	GCATC	1 cut(s)	180
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	5 cut(s)	9, 42, 75, 218, 288
TatI	WGTACW	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	163
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.