Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005902

Physical Location & Seq

Genomic Coordinates Reverse (-)

7444682 .. 7446013

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006461

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACGAAGGTGTGAGATCTGTTGGTCCTTTTGGGGTGTTGGTTTTCGAATCGAAGAAGGAGAAGAAGAGGTCGAGGTTGGTGATGAGTGATTCAGGGTCGAGTGATGAGCTATTGATGCCAAGGAGGAAAGTTGGGCTGGAGACTATTCGGGTTTGTAATGGTTTGGACAAGGGCATTGTGGAAGGGGGCGGAATGGTTCCGAATAGGGAGAGACTGGAGCATGGTTATTGGTACAAATATTTGGATGATGGTGGGGGAAGGAGAACTAATTTGGAGATCAAGGATGAGGCTGTTAAAGTGATTAAAGATGTTTCTAAAATGTGCACTTATGACCAAGTGAGGGAGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

119

Amino Acids

13.43

Weight (kDa)

8.9

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005902)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39190 FvH4_6g11810
rosa_chinensis	RchiOBHm_Chr6g0301871
rosa_laevigata	RLG00000006461 RLG00000011214 RLG00000011639 RLG00000024773
rosa_multiflora	Rmu_sc0001644.1_g000007 Rmu_sc0001781.1_g000032 Rmu_sc0002111.1_g000011 Rmu_ssc0000295.1_g000022 Rmu_ssc0000309.1_g000036
rosa_roxburghii	Rroxscaffold_1G00066090 Rroxscaffold_5G00370460 Rroxscaffold_7G00166320
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh1AG084900 Rh1AG401800 Rh2AG279000 Rh3DG271200 Rh4CG167900 Rh6AG422400 Rh6BG176900 Rh6BG429200 Rh6CG134100 Rh6CG435700 Rh6DG422700
rosa_wichuraiana	Rw6G036590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	343
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	137, 208
Alw44I	GTGCAC	1 cut(s)	325
ApaLI	GTGCAC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BccI	CCATC	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	137, 208
BglII	AGATCT	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	1 cut(s)	108
BpmI	CTGGAG	2 cut(s)	161, 239
Bpu14I	TTCGAA	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	253, 292
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	137, 208
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	17, 279
BspACI	CCGC	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	2 cut(s)	17, 279
BssT1I	CCWWGG	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	253, 292
BstKTI	GATC	2 cut(s)	20, 282
BstMAI	GTCTC	2 cut(s)	137, 208
BstMBI	GATC	2 cut(s)	17, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	253, 292
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	3 cut(s)	112, 139, 293
CviKI_1	RGCY	3 cut(s)	112, 139, 293
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	2 cut(s)	19, 281
DpnII	GATC	2 cut(s)	17, 279
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	1 cut(s)	227
FaiI	YATR	2 cut(s)	225, 333
FatI	CATG	1 cut(s)	223
FokI	GGATG	2 cut(s)	260, 299
GsuI	CTGGAG	2 cut(s)	161, 239
Hin1II	CATG	1 cut(s)	227
HinfI	GANTC	2 cut(s)	50, 92
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	3 cut(s)	52, 179, 255
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	17, 279
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	3 cut(s)	81, 125, 203
LweI	GCATC	1 cut(s)	108
MalI	GATC	2 cut(s)	19, 281
MboI	GATC	2 cut(s)	17, 279
MboII	GAAGA	3 cut(s)	67, 76, 79
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	1 cut(s)	271
MnlI	CCTC	5 cut(s)	63, 69, 120, 283, 336
MseI	TTAA	2 cut(s)	297, 306
MwoI	GCNNNNNNNGC	1 cut(s)	118
NdeII	GATC	2 cut(s)	17, 279
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	201
NspV	TTCGAA	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	50, 92
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	297, 306
Sau3AI	GATC	2 cut(s)	17, 279
Sau96I	GGNCC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	4 cut(s)	13, 74, 80, 114
SfaNI	GCATC	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	1 cut(s)	192
SspI	AATATT	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	122
TaqI	TCGA	4 cut(s)	48, 53, 74, 101
TasI	AATT	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	50, 92
Tru1I	TTAA	2 cut(s)	297, 306
Tru9I	TTAA	2 cut(s)	297, 306
VneI	GTGCAC	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.