Rh6DG422700

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005902
Physical Location & Seq
Forward (+)
60406963 .. 60409421
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG422700.1

Sequence Viewer

Length: 897 bp
ATGCCTGCCACCTATGATAGCGAAGAAGTGAAATCTCAGCCACTGAAACCTAGCGGAGTCTATGACGGACCTCAGCTCTCAAAACCCGAAATTTCACTGGGAAAGGAGGAAAACCCCCAGAACAAGAATGGTGCTGAAGAAAGAAAGCGGGTTATTAAAACAGTATGCTCAATACATGCTCCTCGTCCGAGGTTGCGATTTACGTGGGACTCCAGTATTAAAAAGGCTCCGAAGAAGAAGTCAAGAACACCATCAGCTCCGAAATCTAGGTCAAGCTCACCGGTTTCTCGGAGGAAGCTCAAGCATGCCGAGGAACCTATAGTTGCTTCTGCTGAAGTTGAGAAAAGCAGTAATAAGGAGCCAACTGCACCGGAGGTGAAGACAACATCACCTCTACCTCCAAAAACGAAGTCAGCGGCACCGTCAGCTCCAAAAATCAATTCAACACCACCTATGTCTGGGAGAAAACGTGGAAACGCAATCGTCAGGGAGGAACCAAGAGAAGCTTCTATTGAAGCAAGGAGTATTGCTCGTGAAGCGGCGAGAGCTCATCAAATGAGTTTAGCTTCTGGAACTCCGTCGGTCGTCATATCAATGGTCCCTTCGCATGTTTATAGAGTATTTTGGTTGAACCTTCCGAGAAGATTTTGTGATGGTAATCTCCCGGAAACTAAATCGAAACTGACGTTAGAGGATGAGGAAGGCAACGAATTCACGGTTGTCTTTATTCCGGAGCGATATGGGCTGAGTGGAGGGTGGGTGAGCTTTGCGCGGGAAAAAAAGTTGCACGACGGCGACGCCGTAGTGCTTGAACAAATTGAAAAAACTAGACTCAAAGTAAGTCTCCCGGCCCTGAACACAAATATAATTGATCTTACAATGGCTCTTCCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

298

Amino Acids

32.84

Weight (kDa)

9.79

Isoelectric Point (pI)

63.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 198 - 281 3.4e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccII CGCG 1 cut(s) 772
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 5 cut(s) 54, 148, 416, 539, 772
AcsI RAATTY 2 cut(s) 90, 710
AcuI CTGAAG 2 cut(s) 156, 354
AcyI GRCGYC 1 cut(s) 798
AfiI CCNNNNNNNGG 1 cut(s) 458
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 5 cut(s) 444, 515, 631, 812, 821
AjuI GAANNNNNNNTTGG 4 cut(s) 424, 456, 490, 522
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 1 cut(s) 848
AlwNI CAGNNNCTG 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 730
AoxI GGCC 1 cut(s) 849
ApoI RAATTY 2 cut(s) 90, 710
ArsI GACNNNNNNTTYG 6 cut(s) 224, 254, 256, 286, 395, 427
AsiGI ACCGGT 1 cut(s) 280
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 3 cut(s) 68, 598, 850
AsuC2I CCSGG 2 cut(s) 665, 848
AsuHPI GGTGA 4 cut(s) 270, 381, 388, 772
AvaII GGWCC 2 cut(s) 68, 598
BanI GGYRCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 550
BbvCI CCTCAGC 1 cut(s) 72
BccI CCATC 2 cut(s) 259, 647
BceAI ACGGC 2 cut(s) 785, 808
BcnI CCSGG 2 cut(s) 665, 848
BcoDI GTCTC 1 cut(s) 848
BfaI CTAG 4 cut(s) 51, 267, 828, 895
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 2 cut(s) 417, 540
BlsI GCNGC 2 cut(s) 418, 541
Bme1390I CCNGG 2 cut(s) 665, 848
Bme18I GGWCC 2 cut(s) 68, 598
BmgT120I GGNCC 3 cut(s) 68, 598, 850
BmiI GGNNCC 6 cut(s) 228, 315, 360, 420, 495, 600
BmrFI CCNGG 2 cut(s) 665, 848
BmrI ACTGGG 1 cut(s) 107
BmuI ACTGGG 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 386
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 665, 848
BsaAI YACGTR 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 657
BsaHI GRCGYC 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 188, 309
BsaWI WCCGGW 3 cut(s) 280, 370, 730
BsaXI ACNNNNNCTCC 4 cut(s) 454, 484, 744, 774
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 102, 213
Bse8I GATNNNNATC 1 cut(s) 657
BseAI TCCGGA 1 cut(s) 730
BseDI CCNNGG 2 cut(s) 188, 309
BseGI GGATG 1 cut(s) 700
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMII CTCAG 3 cut(s) 50, 86, 737
BseNI ACTGG 2 cut(s) 102, 213
BseRI GAGGAG 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 772
Bsh1285I CGRYCG 1 cut(s) 585
BshFI GGCC 1 cut(s) 851
BshNI GGYRCC 1 cut(s) 418
BshTI ACCGGT 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 585
BsiHKAI GWGCWC 1 cut(s) 550
BsiSI CCGG 5 cut(s) 281, 371, 665, 731, 848
BslFI GGGAC 2 cut(s) 221, 584
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 848
BsmFI GGGAC 2 cut(s) 221, 584
BsnI GGCC 1 cut(s) 851
Bsp1286I GDGCHC 1 cut(s) 550
Bsp13I TCCGGA 1 cut(s) 730
Bsp143I GATC 1 cut(s) 871
BspACI CCGC 5 cut(s) 54, 148, 416, 539, 772
BspANI GGCC 1 cut(s) 851
BspCNI CTCAG 3 cut(s) 49, 85, 738
BspEI TCCGGA 1 cut(s) 730
BspFNI CGCG 1 cut(s) 772
BspLI GGNNCC 6 cut(s) 228, 315, 360, 420, 495, 600
BspQI GCTCTTC 1 cut(s) 891
BspT107I GGYRCC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 2 cut(s) 102, 213
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 188, 309
BssMI GATC 1 cut(s) 871
BssNI GRCGYC 1 cut(s) 798
BssSI CACGAG 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 531
Bst4CI ACNGT 3 cut(s) 163, 423, 718
Bst6I CTCTTC 1 cut(s) 891
BstACI GRCGYC 1 cut(s) 798
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 6, 306
BstDEI CTNAG 3 cut(s) 36, 72, 746
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 1 cut(s) 772
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 1 cut(s) 874
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 1 cut(s) 871
BstMCI CGRYCG 1 cut(s) 585
BstMWI GCNNNNNNNGC 4 cut(s) 425, 536, 545, 742
BstNSI RCATGY 3 cut(s) 179, 308, 611
BstSCI CCNGG 2 cut(s) 663, 846
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 1 cut(s) 772
BstV2I GAAGAC 1 cut(s) 386
BsuRI GGCC 1 cut(s) 851
BtsCI GGATG 1 cut(s) 700
BtsIMutI CAGTG 2 cut(s) 41, 95
Cac8I GCNNGC 2 cut(s) 6, 306
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 772
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 3 cut(s) 68, 598, 850
CseI GACGC 1 cut(s) 806
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 3 cut(s) 176, 305, 608
DdeI CTNAG 3 cut(s) 36, 72, 746
DpnI GATC 1 cut(s) 873
DpnII GATC 1 cut(s) 871
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Ecl136II GAGCTC 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 68, 598
Eco53kI GAGCTC 1 cut(s) 548
Eco57I CTGAAG 2 cut(s) 156, 354
EcoICRI GAGCTC 1 cut(s) 548
EcoRI GAATTC 1 cut(s) 710
EcoT38I GRGCYC 1 cut(s) 550
FaeI CATG 3 cut(s) 179, 308, 611
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 2 cut(s) 221, 584
FatI CATG 3 cut(s) 175, 304, 607
FauI CCCGC 2 cut(s) 141, 765
Fnu4HI GCNGC 2 cut(s) 417, 540
FokI GGATG 1 cut(s) 707
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 2 cut(s) 417, 540
FspBI CTAG 4 cut(s) 51, 267, 828, 895
GlaI GCGC 1 cut(s) 771
GluI GCNGC 2 cut(s) 417, 540
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 851
HapII CCGG 5 cut(s) 281, 371, 665, 731, 848
HgaI GACGC 1 cut(s) 806
HhaI GCGC 1 cut(s) 772
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 3 cut(s) 179, 308, 611
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 3 cut(s) 57, 209, 831
HpaII CCGG 5 cut(s) 281, 371, 665, 731, 848
HphI GGTGA 4 cut(s) 270, 381, 388, 772
Hpy188I TCNGA 5 cut(s) 189, 231, 261, 291, 639
Hpy188III TCNNGA 4 cut(s) 243, 533, 570, 731
Hpy99I CGWCG 3 cut(s) 583, 794, 800
HpyAV CCTTC 3 cut(s) 612, 644, 695
HpyCH4III ACNGT 3 cut(s) 163, 423, 718
HpyCH4IV ACGT 3 cut(s) 203, 469, 686
HpyCH4V TGCA 2 cut(s) 368, 787
HpyF10VI GCNNNNNNNGC 4 cut(s) 425, 536, 545, 742
HpyF3I CTNAG 3 cut(s) 36, 72, 746
HpySE526I ACGT 3 cut(s) 203, 469, 686
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 3 cut(s) 179, 308, 611
HspAI GCGC 1 cut(s) 770
Kpn2I TCCGGA 1 cut(s) 730
Kzo9I GATC 1 cut(s) 871
LguI GCTCTTC 1 cut(s) 891
LmnI GCTCC 6 cut(s) 184, 232, 262, 358, 433, 733
MaeI CTAG 4 cut(s) 51, 267, 828, 895
MaeII ACGT 3 cut(s) 203, 469, 686
MalI GATC 1 cut(s) 873
MboI GATC 1 cut(s) 871
MboII GAAGA 7 cut(s) 35, 149, 244, 247, 391, 654, 878
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 5 cut(s) 90, 439, 710, 816, 867
MlyI GAGTC 3 cut(s) 66, 203, 825
MroI TCCGGA 1 cut(s) 730
MseI TTAA 2 cut(s) 156, 219
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 5 cut(s) 281, 371, 665, 731, 848
MspR9I CCNGG 2 cut(s) 665, 848
MvnI CGCG 1 cut(s) 772
MwoI GCNNNNNNNGC 4 cut(s) 425, 536, 545, 742
NciI CCSGG 2 cut(s) 665, 848
NdeII GATC 1 cut(s) 871
NlaIII CATG 3 cut(s) 179, 308, 611
NlaIV GGNNCC 6 cut(s) 228, 315, 360, 420, 495, 600
NmeAIII GCCGAG 1 cut(s) 334
NspI RCATGY 3 cut(s) 179, 308, 611
PaeI GCATGC 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 891
PcsI WCGNNNNNNNCGW 2 cut(s) 683, 798
PfoI TCCNGGA 1 cut(s) 663
PinAI ACCGGT 1 cut(s) 280
PkrI GCNGC 2 cut(s) 418, 541
PleI GAGTC 3 cut(s) 65, 203, 825
PpsI GAGTC 3 cut(s) 65, 203, 825
Ppu21I YACGTR 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 550
PspN4I GGNNCC 6 cut(s) 228, 315, 360, 420, 495, 600
PspPI GGNCC 3 cut(s) 68, 598, 850
PstNI CAGNNNCTG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 593
SacI GAGCTC 1 cut(s) 550
SapI GCTCTTC 1 cut(s) 891
SaqAI TTAA 2 cut(s) 156, 219
SatI GCNGC 2 cut(s) 417, 540
Sau3AI GATC 1 cut(s) 871
Sau96I GGNCC 3 cut(s) 68, 598, 850
SchI GAGTC 3 cut(s) 66, 203, 825
ScrFI CCNGG 2 cut(s) 665, 848
SduI GDGCHC 1 cut(s) 550
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 2 cut(s) 68, 598
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 308
Sse9I AATT 5 cut(s) 90, 439, 710, 816, 867
SsiI CCGC 5 cut(s) 54, 148, 416, 539, 772
SspMI CTAG 4 cut(s) 51, 267, 828, 895
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 2 cut(s) 663, 846
TaaI ACNGT 3 cut(s) 163, 423, 718
TaiI ACGT 3 cut(s) 206, 472, 689
TaqI TCGA 1 cut(s) 677
TaqII GACCGA 1 cut(s) 571
TasI AATT 5 cut(s) 90, 439, 710, 816, 867
TauI GCSGC 2 cut(s) 419, 542
Tru1I TTAA 2 cut(s) 156, 219
Tru9I TTAA 2 cut(s) 156, 219
TscAI CASTG 2 cut(s) 48, 102
TspGWI ACGGA 2 cut(s) 81, 567
TspRI CASTG 2 cut(s) 48, 102
VpaK11BI GGWCC 2 cut(s) 68, 598
XapI RAATTY 2 cut(s) 90, 710
XceI RCATGY 3 cut(s) 179, 308, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XspI CTAG 4 cut(s) 51, 267, 828, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.