TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g39190 FvH4_6g11810 |
| rosa_chinensis | RchiOBHm_Chr6g0301871 |
| rosa_laevigata | RLG00000006461 RLG00000011214 RLG00000011639 RLG00000024773 |
| rosa_multiflora | Rmu_sc0001644.1_g000007 Rmu_sc0001781.1_g000032 Rmu_sc0002111.1_g000011 Rmu_ssc0000295.1_g000022 Rmu_ssc0000309.1_g000036 |
| rosa_roxburghii | Rroxscaffold_1G00066090 Rroxscaffold_5G00370460 Rroxscaffold_7G00166320 |
| rosa_rugosa | Rorug06G0310500 |
| rosa_samantha | Rh1AG084900 Rh1AG401800 Rh2AG279000 Rh3DG271200 Rh4CG167900 Rh6AG422400 Rh6BG176900 Rh6BG429200 Rh6CG134100 Rh6CG435700 Rh6DG422700 |
| rosa_wichuraiana | Rw6G036590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 5 |
| AccB1I | GGYRCC | 1 cut(s) | 74 |
| AciI | CCGC | 6 cut(s) | 27, 54, 60, 63, 288, 328 |
| AfaI | GTAC | 2 cut(s) | 352, 416 |
| AgsI | TTSAA | 1 cut(s) | 409 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AluBI | AGCT | 2 cut(s) | 39, 208 |
| AluI | AGCT | 2 cut(s) | 39, 208 |
| Alw26I | GTCTC | 1 cut(s) | 304 |
| Ama87I | CYCGRG | 1 cut(s) | 217 |
| AoxI | GGCC | 1 cut(s) | 233 |
| ApeKI | GCWGC | 1 cut(s) | 57 |
| AseI | ATTAAT | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 140 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AspS9I | GGNCC | 1 cut(s) | 233 |
| AsuC2I | CCSGG | 1 cut(s) | 237 |
| AsuHPI | GGTGA | 2 cut(s) | 190, 470 |
| AsuII | TTCGAA | 1 cut(s) | 144 |
| AvaI | CYCGRG | 1 cut(s) | 217 |
| BanI | GGYRCC | 1 cut(s) | 74 |
| BbvI | GCAGC | 1 cut(s) | 69 |
| BccI | CCATC | 3 cut(s) | 332, 362, 455 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BcnI | CCSGG | 1 cut(s) | 237 |
| BcoDI | GTCTC | 1 cut(s) | 304 |
| BisI | GCNGC | 4 cut(s) | 28, 55, 58, 61 |
| BlsI | GCNGC | 4 cut(s) | 29, 56, 59, 62 |
| Bme1390I | CCNGG | 2 cut(s) | 101, 237 |
| BmeT110I | CYCGRG | 1 cut(s) | 217 |
| BmgT120I | GGNCC | 1 cut(s) | 233 |
| BmiI | GGNNCC | 1 cut(s) | 76 |
| BmrFI | CCNGG | 2 cut(s) | 101, 237 |
| BpmI | CTGGAG | 2 cut(s) | 19, 335 |
| Bpu10I | CCTNAGC | 1 cut(s) | 40 |
| Bpu14I | TTCGAA | 1 cut(s) | 144 |
| BpuMI | CCSGG | 1 cut(s) | 237 |
| BsaJI | CCNNGG | 2 cut(s) | 218, 236 |
| Bse1I | ACTGG | 1 cut(s) | 318 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseDI | CCNNGG | 2 cut(s) | 218, 236 |
| BseGI | GGATG | 2 cut(s) | 343, 370 |
| BseMII | CTCAG | 3 cut(s) | 54, 106, 146 |
| BseNI | ACTGG | 1 cut(s) | 318 |
| BseRI | GAGGAG | 1 cut(s) | 235 |
| BseXI | GCAGC | 1 cut(s) | 69 |
| BseYI | CCCAGC | 1 cut(s) | 419 |
| BshFI | GGCC | 1 cut(s) | 235 |
| BshNI | GGYRCC | 1 cut(s) | 74 |
| BsiHKCI | CYCGRG | 1 cut(s) | 217 |
| BsiSI | CCGG | 2 cut(s) | 78, 236 |
| BslFI | GGGAC | 2 cut(s) | 253, 444 |
| BsmAI | GTCTC | 1 cut(s) | 304 |
| BsmFI | GGGAC | 2 cut(s) | 253, 444 |
| BsnI | GGCC | 1 cut(s) | 235 |
| BsoBI | CYCGRG | 1 cut(s) | 217 |
| Bsp119I | TTCGAA | 1 cut(s) | 144 |
| BspACI | CCGC | 6 cut(s) | 27, 54, 60, 63, 288, 328 |
| BspANI | GGCC | 1 cut(s) | 235 |
| BspCNI | CTCAG | 3 cut(s) | 53, 105, 145 |
| BspLI | GGNNCC | 1 cut(s) | 76 |
| BspT104I | TTCGAA | 1 cut(s) | 144 |
| BspT107I | GGYRCC | 1 cut(s) | 74 |
| BsrI | ACTGG | 1 cut(s) | 318 |
| BssECI | CCNNGG | 2 cut(s) | 218, 236 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| Bst6I | CTCTTC | 3 cut(s) | 158, 276, 296 |
| BstBI | TTCGAA | 1 cut(s) | 144 |
| BstDEI | CTNAG | 3 cut(s) | 40, 92, 132 |
| BstF5I | GGATG | 2 cut(s) | 343, 370 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstMAI | GTCTC | 1 cut(s) | 304 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 36, 45, 54, 60, 66, 325 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstSCI | CCNGG | 2 cut(s) | 99, 235 |
| BstV1I | GCAGC | 1 cut(s) | 69 |
| BsuRI | GGCC | 1 cut(s) | 235 |
| BtsCI | GGATG | 2 cut(s) | 343, 370 |
| CfoI | GCGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 1 cut(s) | 233 |
| Csp6I | GTAC | 2 cut(s) | 351, 415 |
| CviAII | CATG | 2 cut(s) | 49, 320 |
| CviJI | RGCY | 5 cut(s) | 39, 69, 99, 208, 235 |
| CviKI_1 | RGCY | 5 cut(s) | 39, 69, 99, 208, 235 |
| CviQI | GTAC | 2 cut(s) | 351, 415 |
| DdeI | CTNAG | 3 cut(s) | 40, 92, 132 |
| Eam1104I | CTCTTC | 3 cut(s) | 158, 276, 296 |
| EarI | CTCTTC | 3 cut(s) | 158, 276, 296 |
| EciI | GGCGGA | 2 cut(s) | 303, 343 |
| Eco88I | CYCGRG | 1 cut(s) | 217 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| FaeI | CATG | 2 cut(s) | 52, 323 |
| FaiI | YATR | 4 cut(s) | 50, 89, 321, 344 |
| FaqI | GGGAC | 2 cut(s) | 253, 444 |
| FatI | CATG | 2 cut(s) | 48, 319 |
| Fnu4HI | GCNGC | 4 cut(s) | 28, 55, 58, 61 |
| FokI | GGATG | 2 cut(s) | 350, 377 |
| Fsp4HI | GCNGC | 4 cut(s) | 28, 55, 58, 61 |
| FspI | TGCGCA | 1 cut(s) | 5 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GluI | GCNGC | 4 cut(s) | 28, 55, 58, 61 |
| GsaI | CCCAGC | 1 cut(s) | 423 |
| GsuI | CTGGAG | 2 cut(s) | 19, 335 |
| HaeIII | GGCC | 1 cut(s) | 235 |
| HapII | CCGG | 2 cut(s) | 78, 236 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin1II | CATG | 2 cut(s) | 52, 323 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HinfI | GANTC | 3 cut(s) | 146, 188, 448 |
| HpaII | CCGG | 2 cut(s) | 78, 236 |
| HphI | GGTGA | 2 cut(s) | 190, 470 |
| Hpy188I | TCNGA | 3 cut(s) | 95, 135, 473 |
| Hpy188III | TCNNGA | 2 cut(s) | 42, 217 |
| Hpy99I | CGWCG | 1 cut(s) | 15 |
| HpyAV | CCTTC | 4 cut(s) | 130, 148, 372, 438 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 36, 45, 54, 60, 66, 325 |
| HpyF3I | CTNAG | 3 cut(s) | 40, 92, 132 |
| Hsp92II | CATG | 2 cut(s) | 52, 323 |
| HspAI | GCGC | 1 cut(s) | 4 |
| LmnI | GCTCC | 1 cut(s) | 316 |
| Lsp1109I | GCAGC | 1 cut(s) | 69 |
| MboII | GAAGA | 6 cut(s) | 114, 163, 172, 175, 293, 313 |
| MluCI | AATT | 2 cut(s) | 355, 388 |
| MlyI | GAGTC | 1 cut(s) | 457 |
| MroXI | GAANNNNTTC | 1 cut(s) | 140 |
| MseI | TTAA | 2 cut(s) | 212, 499 |
| MspA1I | CMGCKG | 1 cut(s) | 60 |
| MspI | CCGG | 2 cut(s) | 78, 236 |
| MspR9I | CCNGG | 2 cut(s) | 101, 237 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 36, 45, 54, 60, 66, 325 |
| NciI | CCSGG | 1 cut(s) | 237 |
| NlaIII | CATG | 2 cut(s) | 52, 323 |
| NlaIV | GGNNCC | 1 cut(s) | 76 |
| NsbI | TGCGCA | 1 cut(s) | 5 |
| NspV | TTCGAA | 1 cut(s) | 144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 140 |
| PfeI | GAWTC | 2 cut(s) | 146, 188 |
| PkrI | GCNGC | 4 cut(s) | 29, 56, 59, 62 |
| PleI | GAGTC | 1 cut(s) | 456 |
| PpsI | GAGTC | 1 cut(s) | 456 |
| PshBI | ATTAAT | 1 cut(s) | 212 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspFI | CCCAGC | 1 cut(s) | 419 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 1 cut(s) | 76 |
| PspPI | GGNCC | 1 cut(s) | 233 |
| RsaI | GTAC | 2 cut(s) | 352, 416 |
| RsaNI | GTAC | 2 cut(s) | 351, 415 |
| SaqAI | TTAA | 2 cut(s) | 212, 499 |
| SatI | GCNGC | 4 cut(s) | 28, 55, 58, 61 |
| Sau96I | GGNCC | 1 cut(s) | 233 |
| SchI | GAGTC | 1 cut(s) | 457 |
| ScrFI | CCNGG | 2 cut(s) | 101, 237 |
| SetI | ASST | 7 cut(s) | 41, 115, 141, 170, 176, 210, 399 |
| SfuI | TTCGAA | 1 cut(s) | 144 |
| Sse9I | AATT | 2 cut(s) | 355, 388 |
| SsiI | CCGC | 6 cut(s) | 27, 54, 60, 63, 288, 328 |
| StyD4I | CCNGG | 2 cut(s) | 99, 235 |
| TaqI | TCGA | 5 cut(s) | 125, 144, 149, 170, 197 |
| TasI | AATT | 2 cut(s) | 355, 388 |
| TauI | GCSGC | 3 cut(s) | 30, 57, 63 |
| TfiI | GAWTC | 2 cut(s) | 146, 188 |
| Tru1I | TTAA | 2 cut(s) | 212, 499 |
| Tru9I | TTAA | 2 cut(s) | 212, 499 |
| TseI | GCWGC | 1 cut(s) | 57 |
| VspI | ATTAAT | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 140 |