RLG00000024773

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005902
Physical Location & Seq
Forward (+)
39005694 .. 39010477
4784 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024773

Sequence Viewer

Length: 960 bp
ATGGCTCCTCGTGGTTCAGCTGCTGCCACAACTGGAATACGCAGCCGTGGTATCTGTGGAGGCGGCAACTCTAGCTCCGGAGGCATGGGCGGTGGCGGTGGTGGCTCTGGTGCCGGAAACAACATACTTAGGTACTACACCGACAACACTCTTGGCTTGAAGATCTCCCCCATCGTCATGCTCGCCATGAGCCTCTGCTTCATCAGCTGCGTCACTGCCCTCCATAAAGAGAAGAAGAGGTCGAGGTTGGTGATGAGTGATTCAGGGTCGAGTGATGAGCTATTGATGCCGAGGAGGAAAGTTGGGCTGGAGACTATTCGGGTTTGTAATAGTTTGGACAAGGGCATTGTGGAAGGGGGCGGAATGGTTCCGAAGAGGAAGAGACTGGAGCATGGTAGGCGGAATGAGGATGGAAGTCGATACATTGGGGAAGATTGCAAAAAAGCTGAGTCAGACGAATGTAGGATCAAAGTCAAAGGAGGTTACCCTATACATGTTCCAGGTAAACTTCGAAACGTCAATGAAGATGCCTACTGTCATCGTGTTGTCTCCATTGGAACTATGTTTTATAAAAGCAAACAGCTTGAATATGATGATGTCATAGAGAATAAATGGCGGTGCATGCCACTCTTTTTTCAACGAAGGAAAGATCCTGCAAAGCCTGACAGACTCAAGATCACAGAATGCAACGATGCTATTCATGATCTAGCAACAAAAGTGAAGATCCGCAGGGGCTATAGTGGAGAAACAGATCAGTTCAGTAATCTTACAGAGTTCATGTCACCTGATGGTTGCTTTATAATGGAACTTTTACTCAGGTTTGATCAACACTACGGCGTGATCTTGCGTTACTTGAAAATCAGATCGCATTCTTTGTTCTCGAAGAATTGTATGACTTCAGCAAGCCCCATCTCAAGAGCAATTAACGCACCGAACTCGGTCACTAGCCTCTTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

320

Amino Acids

35.28

Weight (kDa)

9.48

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 39 - 75 2.1e-10 Sec61beta family
DUF247 PF03140 165 - 277 1.2e-14 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 570, 800
AccB1I GGYRCC 1 cut(s) 110
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 7 cut(s) 63, 90, 96, 360, 400, 616, 727
AclWI GGATC 3 cut(s) 473, 644, 718
AcuI CTGAAG 1 cut(s) 882
AfaI GTAC 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 4 cut(s) 160, 587, 638, 856
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 6 cut(s) 20, 75, 207, 280, 446, 583
AluI AGCT 6 cut(s) 20, 75, 207, 280, 446, 583
Alw26I GTCTC 3 cut(s) 305, 376, 553
AlwI GGATC 3 cut(s) 473, 644, 718
AlwNI CAGNNNCTG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 77
ApeKI GCWGC 4 cut(s) 20, 23, 42, 207
AsuHPI GGTGA 2 cut(s) 262, 774
AsuII TTCGAA 1 cut(s) 511
BanI GGYRCC 1 cut(s) 110
BauI CACGAG 1 cut(s) 9
BbvI GCAGC 4 cut(s) 7, 10, 54, 194
BccI CCATC 4 cut(s) 179, 404, 782, 917
BceAI ACGGC 2 cut(s) 30, 850
BcgI CGANNNNNNTGC 2 cut(s) 918, 952
BciT130I CCWGG 1 cut(s) 501
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 3 cut(s) 305, 376, 553
BfaI CTAG 3 cut(s) 72, 707, 945
BfmI CTRYAG 1 cut(s) 736
BglII AGATCT 1 cut(s) 162
BisI GCNGC 5 cut(s) 21, 24, 43, 64, 208
BlsI GCNGC 5 cut(s) 22, 25, 44, 65, 209
Bme1390I CCNGG 1 cut(s) 501
BmiI GGNNCC 3 cut(s) 6, 112, 369
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 3 cut(s) 276, 517, 682
BpmI CTGGAG 2 cut(s) 329, 407
Bpu14I TTCGAA 1 cut(s) 511
BpuEI CTTGAG 2 cut(s) 656, 898
BsaJI CCNNGG 2 cut(s) 46, 290
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse1I ACTGG 2 cut(s) 37, 390
BseAI TCCGGA 1 cut(s) 77
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 46, 290
BseGI GGATG 1 cut(s) 415
BseMII CTCAG 2 cut(s) 438, 829
BseNI ACTGG 2 cut(s) 37, 390
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 4 cut(s) 7, 10, 54, 194
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 2 cut(s) 78, 114
BsmAI GTCTC 3 cut(s) 305, 376, 553
BsmI GAATGC 2 cut(s) 689, 868
Bsp119I TTCGAA 1 cut(s) 511
Bsp13I TCCGGA 1 cut(s) 77
BspACI CCGC 7 cut(s) 63, 90, 96, 360, 400, 616, 727
BspCNI CTCAG 2 cut(s) 439, 828
BspEI TCCGGA 1 cut(s) 77
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 3 cut(s) 6, 112, 369
BspPI GGATC 3 cut(s) 473, 644, 718
BspT104I TTCGAA 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 110
BsrI ACTGG 2 cut(s) 37, 390
BssECI CCNNGG 2 cut(s) 46, 290
BssSI CACGAG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 3 cut(s) 230, 368, 374
BstBI TTCGAA 1 cut(s) 511
BstC8I GCNNGC 3 cut(s) 183, 623, 904
BstDEI CTNAG 3 cut(s) 128, 447, 815
BstDSI CCRYGG 1 cut(s) 46
BstEII GGTNACC 1 cut(s) 482
BstF5I GGATG 1 cut(s) 415
BstMAI GTCTC 3 cut(s) 305, 376, 553
BstMWI GCNNNNNNNGC 8 cut(s) 72, 81, 102, 204, 286, 397, 622, 926
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 2 cut(s) 497, 625
BstPI GGTNACC 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 736
BstV1I GCAGC 4 cut(s) 7, 10, 54, 194
BstX2I RGATCY 3 cut(s) 162, 649, 723
BstYI RGATCY 3 cut(s) 162, 649, 723
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 183, 623, 904
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 700
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 133
CviAII CATG 8 cut(s) 85, 178, 187, 392, 494, 622, 701, 778
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 3 cut(s) 128, 447, 815
Eam1104I CTCTTC 3 cut(s) 230, 368, 374
EarI CTCTTC 3 cut(s) 230, 368, 374
EciI GGCGGA 2 cut(s) 375, 415
Eco57I CTGAAG 1 cut(s) 882
Eco91I GGTNACC 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 499
FaeI CATG 8 cut(s) 88, 181, 190, 395, 497, 625, 704, 781
FatI CATG 8 cut(s) 84, 177, 186, 391, 493, 621, 700, 777
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 5 cut(s) 21, 24, 43, 64, 208
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 5 cut(s) 21, 24, 43, 64, 208
FspBI CTAG 3 cut(s) 72, 707, 945
GluI GCNGC 5 cut(s) 21, 24, 43, 64, 208
GsuI CTGGAG 2 cut(s) 329, 407
HapII CCGG 2 cut(s) 78, 114
HgaI GACGC 1 cut(s) 199
Hin1II CATG 8 cut(s) 88, 181, 190, 395, 497, 625, 704, 781
HinfI GANTC 3 cut(s) 260, 449, 669
HpaII CCGG 2 cut(s) 78, 114
HphI GGTGA 2 cut(s) 262, 774
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 3 cut(s) 372, 454, 863
Hpy188III TCNNGA 5 cut(s) 78, 673, 701, 880, 915
Hpy8I GTNNAC 1 cut(s) 506
HpyAV CCTTC 2 cut(s) 347, 636
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 4 cut(s) 438, 621, 656, 687
HpyF10VI GCNNNNNNNGC 8 cut(s) 72, 81, 102, 204, 286, 397, 622, 926
HpyF3I CTNAG 3 cut(s) 128, 447, 815
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 8 cut(s) 88, 181, 190, 395, 497, 625, 704, 781
Kpn2I TCCGGA 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 823
LmnI GCTCC 3 cut(s) 10, 80, 388
Lsp1109I GCAGC 4 cut(s) 7, 10, 54, 194
LweI GCATC 3 cut(s) 276, 517, 682
MaeI CTAG 3 cut(s) 72, 707, 945
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 5 cut(s) 211, 482, 780, 848, 940
MboII GAAGA 9 cut(s) 172, 244, 247, 385, 391, 443, 536, 733, 895
MflI RGATCY 3 cut(s) 162, 649, 723
MluCI AATT 2 cut(s) 886, 921
MlyI GAGTC 2 cut(s) 458, 663
MroI TCCGGA 1 cut(s) 77
MseI TTAA 1 cut(s) 924
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 2 cut(s) 20, 207
MspI CCGG 2 cut(s) 78, 114
MspR9I CCNGG 1 cut(s) 501
Mva1269I GAATGC 2 cut(s) 689, 868
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 8 cut(s) 72, 81, 102, 204, 286, 397, 622, 926
NlaIII CATG 8 cut(s) 88, 181, 190, 395, 497, 625, 704, 781
NlaIV GGNNCC 3 cut(s) 6, 112, 369
NmeAIII GCCGAG 1 cut(s) 315
NmuCI GTSAC 3 cut(s) 211, 780, 940
NspI RCATGY 2 cut(s) 497, 625
NspV TTCGAA 1 cut(s) 511
PaeI GCATGC 1 cut(s) 625
PagI TCATGA 1 cut(s) 700
PciI ACATGT 1 cut(s) 493
PctI GAATGC 2 cut(s) 689, 868
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 5 cut(s) 22, 25, 44, 65, 209
PleI GAGTC 2 cut(s) 457, 663
PpsI GAGTC 2 cut(s) 457, 663
PscI ACATGT 1 cut(s) 493
PsiI TTATAA 2 cut(s) 570, 800
Psp6I CCWGG 1 cut(s) 499
PspEI GGTNACC 1 cut(s) 482
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 3 cut(s) 6, 112, 369
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 3 cut(s) 162, 649, 723
PvuII CAGCTG 2 cut(s) 20, 207
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 5 cut(s) 21, 24, 43, 64, 208
SchI GAGTC 2 cut(s) 458, 663
ScrFI CCNGG 1 cut(s) 501
SfaNI GCATC 3 cut(s) 276, 517, 682
SfcI CTRYAG 1 cut(s) 736
SfuI TTCGAA 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 671, 913
SmoI CTYRAG 2 cut(s) 671, 913
SphI GCATGC 1 cut(s) 625
Sse9I AATT 2 cut(s) 886, 921
SsiI CCGC 7 cut(s) 63, 90, 96, 360, 400, 616, 727
SspMI CTAG 3 cut(s) 72, 707, 945
StyD4I CCNGG 1 cut(s) 499
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 1 cut(s) 519
TaqI TCGA 5 cut(s) 242, 269, 418, 511, 881
TaqII GACCGA 1 cut(s) 928
TasI AATT 2 cut(s) 886, 921
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 3 cut(s) 211, 780, 940
TseI GCWGC 4 cut(s) 20, 23, 42, 207
Tsp45I GTSAC 3 cut(s) 211, 780, 940
TspDTI ATGAA 4 cut(s) 190, 537, 689, 766
TspRI CASTG 1 cut(s) 220
XceI RCATGY 2 cut(s) 497, 625
XspI CTAG 3 cut(s) 72, 707, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.