Rh6BG429200

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005902
Physical Location & Seq
Forward (+)
64943344 .. 64945715
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG429200.1

Sequence Viewer

Length: 891 bp
ATGGCTGCCACCTATGATAGCGAAGAAGTGAAATATCAGCCACTGAAACCTAGCGGAGTCTATGACGGACCTCAGCTCTCAAAACCCGAAATTTCACTGAGAAAGGAGGAAAACCCCCAGAACAAGAATGGTGCTGAAGAAAGAAAGCGGGTTATTAAAACAGTATGCTCAATACATGCTCCTCGTCCGCGGCTGCGATTTACGTGGGACTCCAGTATTAAAAAGGCCCCGAAGAAGAAGTCAAGAACACCATCAGCTCCGAAATCTAGGTCAAGCTCACCGGTTTCTGGGAGAAAGCTCAAGCATGCCGAGGAACCTATAGTTGCTTCTGCTGAAGTAAGGAACGCTGCTCTCGAATCCGATGTTGAGAAAAGCAGTAATAAGGAACCAACTGCACCGGAGGTGAAGACAACATCACCTCTACCTCCAAAAACGAAGTCAGCGGCACCATCAGCTCCAAAAATCAATTCAACACCACCTATGTCTGGGAGAAAACGTGGAAACGCAATAGTCAGGGAGGAACCAAGAGATGCTTCTATTGAAGCAAGGAGTATTGCTCGTGAAGCGGCGAGAGCTCATCAAATGAGTTTAGCTTCTGGAACTCCGTCGGTCGTCATATCAATGGTCCCTTCGCATGTTTATAGAGTATTTTGGTTGAACCTTCCGAGAAGATTTTGTGATGGTAATCTCCCGGAAACTAAATCGAAACTGACGTTAGAGGATGAGGAAGGCAACGAATTCACGGTTGTCTTTATTCCGGAGCGACATGGGCTGAGTGGAGGGTGGGTGAGCTTTGCGCGGGAAAAAAAGTTGCACGACGGCGACGCCGTAGTGCTTGAACAAATTGAAAAAAATAGACTCAAAGTAAGTCTCCCGGTCTCCCGGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

296

Amino Acids

32.69

Weight (kDa)

9.84

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 207 - 289 5.1e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 445
AccII CGCG 2 cut(s) 190, 799
AccIII TCCGGA 1 cut(s) 757
AciI CCGC 7 cut(s) 54, 148, 188, 190, 443, 566, 799
AcsI RAATTY 2 cut(s) 90, 737
AcuI CTGAAG 2 cut(s) 156, 354
AcyI GRCGYC 1 cut(s) 825
AfiI CCNNNNNNNGG 2 cut(s) 287, 485
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 5 cut(s) 471, 542, 658, 839, 848
AjuI GAANNNNNNNTTGG 4 cut(s) 451, 483, 517, 549
AluBI AGCT 8 cut(s) 76, 257, 276, 298, 455, 575, 593, 792
AluI AGCT 8 cut(s) 76, 257, 276, 298, 455, 575, 593, 792
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 875, 883
AlwNI CAGNNNCTG 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 757
AoxI GGCC 2 cut(s) 225, 884
ApeKI GCWGC 3 cut(s) 5, 193, 347
ApoI RAATTY 2 cut(s) 90, 737
ArsI GACNNNNNNTTYG 6 cut(s) 224, 254, 256, 286, 422, 454
AsiGI ACCGGT 1 cut(s) 280
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 4 cut(s) 68, 226, 625, 885
AsuC2I CCSGG 3 cut(s) 692, 875, 883
AsuHPI GGTGA 4 cut(s) 270, 408, 415, 799
AvaII GGWCC 2 cut(s) 68, 625
BanI GGYRCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 577
BauI CACGAG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 577
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 180, 334
BccI CCATC 3 cut(s) 259, 457, 674
BceAI ACGGC 2 cut(s) 812, 835
BcnI CCSGG 3 cut(s) 692, 875, 883
BcoDI GTCTC 2 cut(s) 875, 883
BfaI CTAG 2 cut(s) 51, 267
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 6 cut(s) 6, 191, 194, 348, 444, 567
BlsI GCNGC 6 cut(s) 7, 192, 195, 349, 445, 568
Bme1390I CCNGG 3 cut(s) 692, 875, 883
Bme18I GGWCC 2 cut(s) 68, 625
BmgT120I GGNCC 4 cut(s) 68, 226, 625, 885
BmiI GGNNCC 6 cut(s) 228, 315, 387, 447, 522, 627
BmrFI CCNGG 3 cut(s) 692, 875, 883
BmsI GCATC 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 413
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BpmI CTGGAG 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 3 cut(s) 692, 875, 883
BsaAI YACGTR 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 825
BsaI GGTCTC 1 cut(s) 883
BsaJI CCNNGG 2 cut(s) 188, 309
BsaWI WCCGGW 3 cut(s) 280, 397, 757
BsaXI ACNNNNNCTCC 4 cut(s) 481, 511, 771, 801
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 485
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 684
BseAI TCCGGA 1 cut(s) 757
BseDI CCNNGG 2 cut(s) 188, 309
BseGI GGATG 1 cut(s) 727
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 2 cut(s) 287, 485
BseMII CTCAG 3 cut(s) 86, 89, 764
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 180, 334
BsgI GTGCAG 1 cut(s) 378
Bsh1236I CGCG 2 cut(s) 190, 799
Bsh1285I CGRYCG 1 cut(s) 612
BshFI GGCC 2 cut(s) 227, 886
BshNI GGYRCC 1 cut(s) 445
BshTI ACCGGT 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 577
BsiSI CCGG 6 cut(s) 281, 398, 692, 758, 875, 883
BslFI GGGAC 2 cut(s) 221, 611
BslI CCNNNNNNNGG 2 cut(s) 287, 485
BsmAI GTCTC 2 cut(s) 875, 883
BsmFI GGGAC 2 cut(s) 221, 611
BsnI GGCC 2 cut(s) 227, 886
Bso31I GGTCTC 1 cut(s) 883
Bsp1286I GDGCHC 1 cut(s) 577
Bsp13I TCCGGA 1 cut(s) 757
BspACI CCGC 7 cut(s) 54, 148, 188, 190, 443, 566, 799
BspANI GGCC 2 cut(s) 227, 886
BspCNI CTCAG 3 cut(s) 85, 90, 765
BspEI TCCGGA 1 cut(s) 757
BspFNI CGCG 2 cut(s) 190, 799
BspLI GGNNCC 6 cut(s) 228, 315, 387, 447, 522, 627
BspT107I GGYRCC 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 883
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 188, 309
BssNI GRCGYC 1 cut(s) 825
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst4CI ACNGT 2 cut(s) 163, 745
BstACI GRCGYC 1 cut(s) 825
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 72, 98, 773
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 2 cut(s) 190, 799
BstHHI GCGC 1 cut(s) 799
BstMAI GTCTC 2 cut(s) 875, 883
BstMCI CGRYCG 1 cut(s) 612
BstMWI GCNNNNNNNGC 4 cut(s) 452, 563, 572, 769
BstNSI RCATGY 3 cut(s) 179, 308, 638
BstSCI CCNGG 3 cut(s) 690, 873, 881
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 2 cut(s) 190, 799
BstV1I GCAGC 2 cut(s) 180, 334
BstV2I GAAGAC 1 cut(s) 413
BsuRI GGCC 2 cut(s) 227, 886
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 727
BtsIMutI CAGTG 2 cut(s) 41, 95
Cac8I GCNNGC 1 cut(s) 306
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 799
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 4 cut(s) 68, 226, 625, 885
Cfr42I CCGCGG 1 cut(s) 191
CseI GACGC 1 cut(s) 833
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 4 cut(s) 176, 305, 635, 767
DdeI CTNAG 3 cut(s) 72, 98, 773
Ecl136II GAGCTC 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 883
Eco47I GGWCC 2 cut(s) 68, 625
Eco53kI GAGCTC 1 cut(s) 575
Eco57I CTGAAG 2 cut(s) 156, 354
EcoICRI GAGCTC 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 737
EcoT38I GRGCYC 1 cut(s) 577
FaeI CATG 4 cut(s) 179, 308, 638, 770
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FaqI GGGAC 2 cut(s) 221, 611
FatI CATG 4 cut(s) 175, 304, 634, 766
FauI CCCGC 2 cut(s) 141, 792
Fnu4HI GCNGC 6 cut(s) 6, 191, 194, 348, 444, 567
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 6 cut(s) 6, 191, 194, 348, 444, 567
FspBI CTAG 2 cut(s) 51, 267
GlaI GCGC 1 cut(s) 798
GluI GCNGC 6 cut(s) 6, 191, 194, 348, 444, 567
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 2 cut(s) 227, 886
HapII CCGG 6 cut(s) 281, 398, 692, 758, 875, 883
HgaI GACGC 1 cut(s) 833
HhaI GCGC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 825
Hin1II CATG 4 cut(s) 179, 308, 638, 770
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HinfI GANTC 4 cut(s) 57, 209, 356, 858
HpaII CCGG 6 cut(s) 281, 398, 692, 758, 875, 883
HphI GGTGA 4 cut(s) 270, 408, 415, 799
Hpy188I TCNGA 3 cut(s) 261, 361, 666
Hpy188III TCNNGA 5 cut(s) 243, 353, 560, 597, 758
Hpy99I CGWCG 3 cut(s) 610, 821, 827
HpyAV CCTTC 3 cut(s) 639, 671, 722
HpyCH4III ACNGT 2 cut(s) 163, 745
HpyCH4IV ACGT 3 cut(s) 203, 496, 713
HpyCH4V TGCA 2 cut(s) 395, 814
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 563, 572, 769
HpyF3I CTNAG 3 cut(s) 72, 98, 773
HpySE526I ACGT 3 cut(s) 203, 496, 713
Hsp92I GRCGYC 1 cut(s) 825
Hsp92II CATG 4 cut(s) 179, 308, 638, 770
HspAI GCGC 1 cut(s) 797
Kpn2I TCCGGA 1 cut(s) 757
KspI CCGCGG 1 cut(s) 191
LmnI GCTCC 4 cut(s) 184, 262, 460, 760
Lsp1109I GCAGC 2 cut(s) 180, 334
LweI GCATC 1 cut(s) 520
MaeI CTAG 2 cut(s) 51, 267
MaeII ACGT 3 cut(s) 203, 496, 713
MboII GAAGA 6 cut(s) 35, 149, 244, 247, 418, 681
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 4 cut(s) 90, 466, 737, 843
MlyI GAGTC 3 cut(s) 66, 203, 852
MroI TCCGGA 1 cut(s) 757
MseI TTAA 2 cut(s) 156, 219
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 190, 443
MspI CCGG 6 cut(s) 281, 398, 692, 758, 875, 883
MspR9I CCNGG 3 cut(s) 692, 875, 883
MvnI CGCG 2 cut(s) 190, 799
MwoI GCNNNNNNNGC 4 cut(s) 452, 563, 572, 769
NciI CCSGG 3 cut(s) 692, 875, 883
NlaIII CATG 4 cut(s) 179, 308, 638, 770
NlaIV GGNNCC 6 cut(s) 228, 315, 387, 447, 522, 627
NmeAIII GCCGAG 1 cut(s) 334
NspI RCATGY 3 cut(s) 179, 308, 638
PaeI GCATGC 1 cut(s) 308
PcsI WCGNNNNNNNCGW 3 cut(s) 351, 710, 825
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 690
PinAI ACCGGT 1 cut(s) 280
PkrI GCNGC 6 cut(s) 7, 192, 195, 349, 445, 568
PleI GAGTC 3 cut(s) 65, 203, 852
PpsI GAGTC 3 cut(s) 65, 203, 852
Ppu21I YACGTR 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 577
PspN4I GGNNCC 6 cut(s) 228, 315, 387, 447, 522, 627
PspPI GGNCC 4 cut(s) 68, 226, 625, 885
PstNI CAGNNNCTG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 577
SacII CCGCGG 1 cut(s) 191
SaqAI TTAA 2 cut(s) 156, 219
SatI GCNGC 6 cut(s) 6, 191, 194, 348, 444, 567
Sau96I GGNCC 4 cut(s) 68, 226, 625, 885
SchI GAGTC 3 cut(s) 66, 203, 852
ScrFI CCNGG 3 cut(s) 692, 875, 883
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 318
Sfr303I CCGCGG 1 cut(s) 191
SgrBI CCGCGG 1 cut(s) 191
SinI GGWCC 2 cut(s) 68, 625
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 308
Sse9I AATT 4 cut(s) 90, 466, 737, 843
SsiI CCGC 7 cut(s) 54, 148, 188, 190, 443, 566, 799
SspMI CTAG 2 cut(s) 51, 267
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 3 cut(s) 690, 873, 881
TaaI ACNGT 2 cut(s) 163, 745
TaiI ACGT 3 cut(s) 206, 499, 716
TaqI TCGA 2 cut(s) 354, 704
TaqII GACCGA 1 cut(s) 598
TasI AATT 4 cut(s) 90, 466, 737, 843
TauI GCSGC 3 cut(s) 193, 446, 569
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 156, 219
Tru9I TTAA 2 cut(s) 156, 219
TscAI CASTG 2 cut(s) 48, 102
TseI GCWGC 3 cut(s) 5, 193, 347
TspGWI ACGGA 2 cut(s) 81, 594
TspRI CASTG 2 cut(s) 48, 102
VpaK11BI GGWCC 2 cut(s) 68, 625
XapI RAATTY 2 cut(s) 90, 737
XceI RCATGY 3 cut(s) 179, 308, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XspI CTAG 2 cut(s) 51, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.