Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000295.1

Orthogroup ID

OG0005902

Physical Location & Seq

Genomic Coordinates Forward (+)

94558 .. 95443

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000295.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggctcctcgtggttcagctactgctacagctggaatgcgcagccgtcatatcggtggaggtggcaactccagctccggaggcatgggcagtagcggcggtggctctagtgccggaaacaacatactcaggttctacaccgacgacgttcctagcttgaagatctcccccaccgtcatgctcgtcatgagcctctgcttcatcgacttcatcactgccctccacatggatgaaggtgtgagatctgttggcccttttggggtgttggtgaagaataggaattcttcgggggtcgagggatgggctattgatgccgaggaggaaagtccgaggaggaaagttgggccggagactattcgggtttgtaatagtttggacaaaggcattgtggaagggggcggaatggttccgaatagggagagactggagcatggtaggcagaatgaggatggtatgattggtacaaattatttggatgtggttaaaggtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

164

Amino Acids

17.17

Weight (kDa)

6.29

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005902)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39190 FvH4_6g11810
rosa_chinensis	RchiOBHm_Chr6g0301871
rosa_laevigata	RLG00000006461 RLG00000011214 RLG00000011639 RLG00000024773
rosa_multiflora	Rmu_sc0001644.1_g000007 Rmu_sc0001781.1_g000032 Rmu_sc0002111.1_g000011 Rmu_ssc0000295.1_g000022 Rmu_ssc0000309.1_g000036
rosa_roxburghii	Rroxscaffold_1G00066090 Rroxscaffold_5G00370460 Rroxscaffold_7G00166320
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh1AG084900 Rh1AG401800 Rh2AG279000 Rh3DG271200 Rh4CG167900 Rh6AG422400 Rh6BG176900 Rh6BG429200 Rh6CG134100 Rh6CG435700 Rh6DG422700
rosa_wichuraiana	Rw6G036590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	3 cut(s)	96, 99, 399
AcsI	RAATTY	1 cut(s)	280
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	226, 259
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	4 cut(s)	20, 32, 75, 156
AluI	AGCT	4 cut(s)	20, 32, 75, 156
Alw26I	GTCTC	2 cut(s)	344, 415
AlwNI	CAGNNNCTG	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	2 cut(s)	250, 344
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	251, 344
AsuHPI	GGTGA	1 cut(s)	280
BauI	CACGAG	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	2 cut(s)	294, 443
BceAI	ACGGC	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	344, 415
BfaI	CTAG	2 cut(s)	108, 153
BfmI	CTRYAG	1 cut(s)	27
BglII	AGATCT	2 cut(s)	162, 242
BisI	GCNGC	2 cut(s)	43, 97
BlsI	GCNGC	2 cut(s)	44, 98
BmgT120I	GGNCC	2 cut(s)	251, 344
BmiI	GGNNCC	2 cut(s)	6, 408
BmsI	GCATC	1 cut(s)	301
BpmI	CTGGAG	2 cut(s)	55, 446
BsaJI	CCNNGG	2 cut(s)	315, 329
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 259
Bse1I	ACTGG	1 cut(s)	429
BseAI	TCCGGA	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	315, 329
BseGI	GGATG	4 cut(s)	235, 305, 454, 481
BseLI	CCNNNNNNNGG	2 cut(s)	226, 259
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	332, 346
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	252, 346
BsiSI	CCGG	3 cut(s)	78, 114, 347
BslI	CCNNNNNNNGG	2 cut(s)	226, 259
BsmAI	GTCTC	2 cut(s)	344, 415
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	252, 346
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	162, 242
BspACI	CCGC	3 cut(s)	96, 99, 399
BspANI	GGCC	2 cut(s)	252, 346
BspCNI	CTCAG	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	6, 408
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	2 cut(s)	315, 329
BssMI	GATC	2 cut(s)	162, 242
BssSI	CACGAG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	4 cut(s)	235, 305, 454, 481
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	2 cut(s)	165, 245
BstMAI	GTCTC	2 cut(s)	344, 415
BstMBI	GATC	2 cut(s)	162, 242
BstMWI	GCNNNNNNNGC	6 cut(s)	72, 81, 96, 102, 311, 436
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	162, 242
BstYI	RGATCY	2 cut(s)	162, 242
BsuRI	GGCC	2 cut(s)	252, 346
BtsCI	GGATG	4 cut(s)	235, 305, 454, 481
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	251, 344
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	5 cut(s)	85, 178, 187, 226, 431
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	164, 244
DpnII	GATC	2 cut(s)	162, 242
EciI	GGCGGA	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	280
FaeI	CATG	5 cut(s)	88, 181, 190, 229, 434
FaiI	YATR	8 cut(s)	51, 86, 125, 179, 188, 227, 432, 455
FatI	CATG	5 cut(s)	84, 177, 186, 225, 430
Fnu4HI	GCNGC	2 cut(s)	43, 97
FokI	GGATG	4 cut(s)	242, 312, 461, 488
Fsp4HI	GCNGC	2 cut(s)	43, 97
FspBI	CTAG	2 cut(s)	108, 153
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	2 cut(s)	43, 97
GsuI	CTGGAG	2 cut(s)	55, 446
HaeIII	GGCC	2 cut(s)	252, 346
HapII	CCGG	3 cut(s)	78, 114, 347
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	88, 181, 190, 229, 434
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HpaII	CCGG	3 cut(s)	78, 114, 347
HphI	GGTGA	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	330, 411
Hpy188III	TCNNGA	2 cut(s)	78, 187
Hpy99I	CGWCG	2 cut(s)	146, 149
HpyAV	CCTTC	2 cut(s)	227, 386
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	6 cut(s)	72, 81, 96, 102, 311, 436
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	88, 181, 190, 229, 434
HspAI	GCGC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	162, 242
LmnI	GCTCC	3 cut(s)	10, 80, 427
LpnPI	CCDG	7 cut(s)	18, 85, 91, 115, 127, 360, 410
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	108, 153
MaeII	ACGT	1 cut(s)	147
MalI	GATC	2 cut(s)	164, 244
MboI	GATC	2 cut(s)	162, 242
MboII	GAAGA	3 cut(s)	172, 276, 283
MflI	RGATCY	2 cut(s)	162, 242
MluCI	AATT	2 cut(s)	280, 466
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	3 cut(s)	54, 176, 228
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	3 cut(s)	78, 114, 347
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	6 cut(s)	72, 81, 96, 102, 311, 436
NdeII	GATC	2 cut(s)	162, 242
NlaIII	CATG	5 cut(s)	88, 181, 190, 229, 434
NlaIV	GGNNCC	2 cut(s)	6, 408
NmeAIII	GCCGAG	1 cut(s)	340
NsbI	TGCGCA	1 cut(s)	41
PagI	TCATGA	1 cut(s)	186
PctI	GAATGC	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	44, 98
PspN4I	GGNNCC	2 cut(s)	6, 408
PspPI	GGNCC	2 cut(s)	251, 344
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	2 cut(s)	162, 242
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	3 cut(s)	54, 176, 228
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	2 cut(s)	43, 97
Sau3AI	GATC	2 cut(s)	162, 242
Sau96I	GGNCC	2 cut(s)	251, 344
SetI	ASST	9 cut(s)	22, 34, 64, 77, 134, 150, 158, 238, 490
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	3 cut(s)	54, 176, 228
Sse9I	AATT	2 cut(s)	280, 466
SsiI	CCGC	3 cut(s)	96, 99, 399
SspMI	CTAG	2 cut(s)	108, 153
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	204, 294
TasI	AATT	2 cut(s)	280, 466
TauI	GCSGC	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	190, 199, 246
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	280
XspI	CTAG	2 cut(s)	108, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.