Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005902

Physical Location & Seq

Genomic Coordinates Forward (+)

27163369 .. 27164237

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG271200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAGTGATTCAGGGTCGAGTGATGAGCTATTGATGCCGAGGAGGAAAGTTGGGCCGGAGACTATTCAAGTTTGTAATAGTTTGGACAAAGGCATTGTGGAAGGGGGCGGAATGGTTCCGAAGAGGGAGAGACTGGAGCATGGTAGGCGGAATGAGGATGGTATGATTGGTACAAATTATTTGGATGTGGTTGGAGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

67

Amino Acids

7.24

Weight (kDa)

5.24

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005902)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39190 FvH4_6g11810
rosa_chinensis	RchiOBHm_Chr6g0301871
rosa_laevigata	RLG00000006461 RLG00000011214 RLG00000011639 RLG00000024773
rosa_multiflora	Rmu_sc0001644.1_g000007 Rmu_sc0001781.1_g000032 Rmu_sc0002111.1_g000011 Rmu_ssc0000295.1_g000022 Rmu_ssc0000309.1_g000036
rosa_roxburghii	Rroxscaffold_1G00066090 Rroxscaffold_5G00370460 Rroxscaffold_7G00166320
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh1AG084900 Rh1AG401800 Rh2AG279000 Rh3DG271200 Rh4CG167900 Rh6AG422400 Rh6BG176900 Rh6BG429200 Rh6CG134100 Rh6CG435700 Rh6DG422700
rosa_wichuraiana	Rw6G036590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	108, 148
AfaI	GTAC	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	2 cut(s)	53, 124
AoxI	GGCC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	53
BccI	CCATC	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	53, 124
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	163, 190
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	53, 124
BsnI	GGCC	1 cut(s)	55
BspACI	CCGC	2 cut(s)	108, 148
BspANI	GGCC	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	163, 190
BstMAI	GTCTC	2 cut(s)	53, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 145
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	163, 190
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	2 cut(s)	28, 55
CviKI_1	RGCY	2 cut(s)	28, 55
CviQI	GTAC	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	2 cut(s)	123, 163
FaeI	CATG	1 cut(s)	143
FaiI	YATR	2 cut(s)	141, 164
FatI	CATG	1 cut(s)	139
FokI	GGATG	2 cut(s)	170, 197
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 145
Hsp92II	CATG	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	2 cut(s)	69, 119
LweI	GCATC	1 cut(s)	24
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	33, 36, 117, 148, 188
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	34, 145
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	117
NmeAIII	GCCGAG	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	53
SetI	ASST	2 cut(s)	30, 199
SfaNI	GCATC	1 cut(s)	24
SgeI	CNNG	7 cut(s)	24, 30, 51, 68, 80, 146, 152
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	2 cut(s)	108, 148
TaqI	TCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.