Rh6CG435700

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005902
Physical Location & Seq
Forward (+)
61547122 .. 61549413
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG435700.1

Sequence Viewer

Length: 924 bp
ATGGCTGCCACCTATGATAGCGAAGGAGTGAAATCTCAGCCACGGAAACCTAGAGGAGTCTATGACGGACCTCAGCTCTCAAAACCCAAAATTTCACTGAGAAAGGAGGAAAACCCCCAGAACAAGAATGGTGCTGAAGAAAGAAAGCGGGTTATTAAAACAGTATGCTCAATACATGCTCCTCGTCCGAGGCTGCGATTTACGTGGGACTCCAGTATTAAAAAGGCCCCGAAGAAGAAGTCAAGAACACCATCAGCTCCGAAATCTAGGTCAAGCTTACCGGTTTCTTGGAGAAAGCTCAAGCATGCCGAGGAACCTATAATTGCATCTGCTGAAGTAAGGAACGCTGCTCTCGAATCCGATGTTGAGAAAAGCAGTAATAAGGAACCAACTGCACCGGAGGTGAAGACAACATCACCTCTACCTCCAAAAACGAAGTCAGCGGCACCATCAGCTCCAAAAATCAATTCAACACCACCTATGTCTGGGAGAAAACGTGGAAACGCAATAGTCAGGGAGGAACCAAGAGATGCTTCTATTGAAGCAAGGAGTATTGCTCGTGAAGCGGCGAGAGCTCATCAAATGAGTTTAGCTTCTGGAACTCCGTCGGTCGTCATATCAATGGTCCCTTCGCATGTTTATAGAGTATTTTGGTTGAACCTTCCGAGAAGATTTTGTGATGGTAATCTCCCGGAAACTAAATCGAAACTGACGTTAGAGGATGAGGAAGGCAACGAATTCACGGTTGTCTTTATTCCGGAGCGATATGGGCTGAGTGGAGGGTGGGTGAGCTTTGCGCGGGAAAAAAAGTTGCACGACGGCGACGCCGTAGTGCTTGAACAAATTGAAAAAACTAGACTCAAAGTAAGTCTCCCGGCCCTGAACACAAATATAATTGATCTTACAATGGCTCTTCCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

307

Amino Acids

33.97

Weight (kDa)

9.97

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 207 - 290 3.6e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 445
AccII CGCG 1 cut(s) 799
AccIII TCCGGA 1 cut(s) 757
AciI CCGC 4 cut(s) 148, 443, 566, 799
AcsI RAATTY 2 cut(s) 90, 737
AcuI CTGAAG 2 cut(s) 156, 354
AcyI GRCGYC 1 cut(s) 825
AfiI CCNNNNNNNGG 1 cut(s) 485
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 5 cut(s) 471, 542, 658, 839, 848
AjuI GAANNNNNNNTTGG 4 cut(s) 451, 483, 517, 549
AluBI AGCT 9 cut(s) 76, 257, 276, 298, 455, 575, 593, 792, 921
AluI AGCT 9 cut(s) 76, 257, 276, 298, 455, 575, 593, 792, 921
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 1 cut(s) 875
Aor13HI TCCGGA 1 cut(s) 757
AoxI GGCC 2 cut(s) 225, 876
ApeKI GCWGC 3 cut(s) 5, 193, 347
ApoI RAATTY 2 cut(s) 90, 737
ArsI GACNNNNNNTTYG 6 cut(s) 224, 254, 256, 286, 422, 454
AsiGI ACCGGT 1 cut(s) 280
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 4 cut(s) 68, 226, 625, 877
AsuC2I CCSGG 2 cut(s) 692, 875
AsuHPI GGTGA 3 cut(s) 408, 415, 799
AvaII GGWCC 2 cut(s) 68, 625
BanI GGYRCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 577
BauI CACGAG 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 577
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 180, 334
BccI CCATC 3 cut(s) 259, 457, 674
BceAI ACGGC 2 cut(s) 812, 835
BcnI CCSGG 2 cut(s) 692, 875
BcoDI GTCTC 1 cut(s) 875
BfaI CTAG 4 cut(s) 51, 267, 855, 922
BisI GCNGC 5 cut(s) 6, 194, 348, 444, 567
BlsI GCNGC 5 cut(s) 7, 195, 349, 445, 568
Bme1390I CCNGG 2 cut(s) 692, 875
Bme18I GGWCC 2 cut(s) 68, 625
BmgT120I GGNCC 4 cut(s) 68, 226, 625, 877
BmiI GGNNCC 6 cut(s) 228, 315, 387, 447, 522, 627
BmrFI CCNGG 2 cut(s) 692, 875
BmsI GCATC 2 cut(s) 335, 520
BpiI GAAGAC 1 cut(s) 413
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BpmI CTGGAG 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 692, 875
BsaAI YACGTR 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 825
BsaJI CCNNGG 3 cut(s) 41, 188, 309
BsaWI WCCGGW 3 cut(s) 280, 397, 757
BsaXI ACNNNNNCTCC 4 cut(s) 481, 511, 771, 801
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 684
BseAI TCCGGA 1 cut(s) 757
BseDI CCNNGG 3 cut(s) 41, 188, 309
BseGI GGATG 1 cut(s) 727
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 4 cut(s) 50, 86, 89, 764
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 69, 171
BseXI GCAGC 2 cut(s) 180, 334
BsgI GTGCAG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 799
Bsh1285I CGRYCG 1 cut(s) 612
BshFI GGCC 2 cut(s) 227, 878
BshNI GGYRCC 1 cut(s) 445
BshTI ACCGGT 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 577
BsiSI CCGG 5 cut(s) 281, 398, 692, 758, 875
BslFI GGGAC 2 cut(s) 221, 611
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 875
BsmFI GGGAC 2 cut(s) 221, 611
BsnI GGCC 2 cut(s) 227, 878
Bsp1286I GDGCHC 1 cut(s) 577
Bsp13I TCCGGA 1 cut(s) 757
Bsp143I GATC 1 cut(s) 898
BspACI CCGC 4 cut(s) 148, 443, 566, 799
BspANI GGCC 2 cut(s) 227, 878
BspCNI CTCAG 4 cut(s) 49, 85, 90, 765
BspEI TCCGGA 1 cut(s) 757
BspFNI CGCG 1 cut(s) 799
BspLI GGNNCC 6 cut(s) 228, 315, 387, 447, 522, 627
BspQI GCTCTTC 1 cut(s) 918
BspT107I GGYRCC 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 3 cut(s) 41, 188, 309
BssMI GATC 1 cut(s) 898
BssNI GRCGYC 1 cut(s) 825
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst4CI ACNGT 2 cut(s) 163, 745
Bst6I CTCTTC 1 cut(s) 918
BstACI GRCGYC 1 cut(s) 825
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 36, 72, 98, 773
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 1 cut(s) 799
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 1 cut(s) 901
BstMAI GTCTC 1 cut(s) 875
BstMBI GATC 1 cut(s) 898
BstMCI CGRYCG 1 cut(s) 612
BstMWI GCNNNNNNNGC 4 cut(s) 452, 563, 572, 769
BstNSI RCATGY 3 cut(s) 179, 308, 638
BstSCI CCNGG 2 cut(s) 690, 873
BstUI CGCG 1 cut(s) 799
BstV1I GCAGC 2 cut(s) 180, 334
BstV2I GAAGAC 1 cut(s) 413
BsuRI GGCC 2 cut(s) 227, 878
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 1 cut(s) 727
BtsIMutI CAGTG 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 799
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 4 cut(s) 68, 226, 625, 877
CseI GACGC 1 cut(s) 833
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 3 cut(s) 176, 305, 635
DdeI CTNAG 4 cut(s) 36, 72, 98, 773
DpnI GATC 1 cut(s) 900
DpnII GATC 1 cut(s) 898
Eam1104I CTCTTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 918
Ecl136II GAGCTC 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 577
Eco47I GGWCC 2 cut(s) 68, 625
Eco53kI GAGCTC 1 cut(s) 575
Eco57I CTGAAG 2 cut(s) 156, 354
EcoICRI GAGCTC 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 737
EcoT38I GRGCYC 1 cut(s) 577
FaeI CATG 3 cut(s) 179, 308, 638
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FaqI GGGAC 2 cut(s) 221, 611
FatI CATG 3 cut(s) 175, 304, 634
FauI CCCGC 2 cut(s) 141, 792
Fnu4HI GCNGC 5 cut(s) 6, 194, 348, 444, 567
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 5 cut(s) 6, 194, 348, 444, 567
FspBI CTAG 4 cut(s) 51, 267, 855, 922
GlaI GCGC 1 cut(s) 798
GluI GCNGC 5 cut(s) 6, 194, 348, 444, 567
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 2 cut(s) 227, 878
HapII CCGG 5 cut(s) 281, 398, 692, 758, 875
HgaI GACGC 1 cut(s) 833
HhaI GCGC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 825
Hin1II CATG 3 cut(s) 179, 308, 638
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 4 cut(s) 57, 209, 356, 858
HpaII CCGG 5 cut(s) 281, 398, 692, 758, 875
HphI GGTGA 3 cut(s) 408, 415, 799
Hpy188I TCNGA 4 cut(s) 189, 261, 361, 666
Hpy188III TCNNGA 5 cut(s) 243, 353, 560, 597, 758
Hpy99I CGWCG 3 cut(s) 610, 821, 827
HpyAV CCTTC 4 cut(s) 17, 639, 671, 722
HpyCH4III ACNGT 2 cut(s) 163, 745
HpyCH4IV ACGT 3 cut(s) 203, 496, 713
HpyCH4V TGCA 3 cut(s) 326, 395, 814
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 563, 572, 769
HpyF3I CTNAG 4 cut(s) 36, 72, 98, 773
HpySE526I ACGT 3 cut(s) 203, 496, 713
Hsp92I GRCGYC 1 cut(s) 825
Hsp92II CATG 3 cut(s) 179, 308, 638
HspAI GCGC 1 cut(s) 797
Kpn2I TCCGGA 1 cut(s) 757
Kzo9I GATC 1 cut(s) 898
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 4 cut(s) 184, 262, 460, 760
Lsp1109I GCAGC 2 cut(s) 180, 334
LweI GCATC 2 cut(s) 335, 520
MaeI CTAG 4 cut(s) 51, 267, 855, 922
MaeII ACGT 3 cut(s) 203, 496, 713
MalI GATC 1 cut(s) 900
MboI GATC 1 cut(s) 898
MboII GAAGA 6 cut(s) 149, 244, 247, 418, 681, 905
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 6 cut(s) 90, 321, 466, 737, 843, 894
MlyI GAGTC 3 cut(s) 66, 203, 852
MroI TCCGGA 1 cut(s) 757
MseI TTAA 2 cut(s) 156, 219
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 5 cut(s) 281, 398, 692, 758, 875
MspR9I CCNGG 2 cut(s) 692, 875
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 4 cut(s) 452, 563, 572, 769
NciI CCSGG 2 cut(s) 692, 875
NdeII GATC 1 cut(s) 898
NlaIII CATG 3 cut(s) 179, 308, 638
NlaIV GGNNCC 6 cut(s) 228, 315, 387, 447, 522, 627
NmeAIII GCCGAG 1 cut(s) 334
NspI RCATGY 3 cut(s) 179, 308, 638
PaeI GCATGC 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 918
PcsI WCGNNNNNNNCGW 3 cut(s) 351, 710, 825
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 690
PinAI ACCGGT 1 cut(s) 280
PkrI GCNGC 5 cut(s) 7, 195, 349, 445, 568
PleI GAGTC 3 cut(s) 65, 203, 852
PpsI GAGTC 3 cut(s) 65, 203, 852
Ppu21I YACGTR 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 577
PspN4I GGNNCC 6 cut(s) 228, 315, 387, 447, 522, 627
PspPI GGNCC 4 cut(s) 68, 226, 625, 877
RseI CAYNNNNRTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 577
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 2 cut(s) 156, 219
SatI GCNGC 5 cut(s) 6, 194, 348, 444, 567
Sau3AI GATC 1 cut(s) 898
Sau96I GGNCC 4 cut(s) 68, 226, 625, 877
SchI GAGTC 3 cut(s) 66, 203, 852
ScrFI CCNGG 2 cut(s) 692, 875
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 2 cut(s) 335, 520
SinI GGWCC 2 cut(s) 68, 625
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 308
Sse9I AATT 6 cut(s) 90, 321, 466, 737, 843, 894
SsiI CCGC 4 cut(s) 148, 443, 566, 799
SspMI CTAG 4 cut(s) 51, 267, 855, 922
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 2 cut(s) 690, 873
TaaI ACNGT 2 cut(s) 163, 745
TaiI ACGT 3 cut(s) 206, 499, 716
TaqI TCGA 2 cut(s) 354, 704
TaqII GACCGA 1 cut(s) 598
TasI AATT 6 cut(s) 90, 321, 466, 737, 843, 894
TauI GCSGC 2 cut(s) 446, 569
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 156, 219
Tru9I TTAA 2 cut(s) 156, 219
TscAI CASTG 1 cut(s) 102
TseI GCWGC 3 cut(s) 5, 193, 347
TspGWI ACGGA 3 cut(s) 58, 81, 594
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 68, 625
XapI RAATTY 2 cut(s) 90, 737
XceI RCATGY 3 cut(s) 179, 308, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XspI CTAG 4 cut(s) 51, 267, 855, 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.