Rw6G036590

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005902
Physical Location & Seq
Forward (+)
61066264 .. 61069146
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036590.1

Sequence Viewer

Length: 774 bp
ATGTCAACGTATTTACAAAATACTGTCTCAATTCATCCTATTTCATCAAATATGGGCTATGATATGTGTATTCTCATTAAGAAGTCAAGAACACCATCAGCTCCGAAATCTAGGTCAAGCTCACCGGTTTCTGGGAGAAAGCTCAAGCATGCCGAGGAACCTATAATTGCTTCTGCTGAAGTTGAGAAAAGCAGTAATAAGGAACCAACTGCACCGGAGGTGAAGACAACATCACCTCTACCTCCAAAAACGAAGTCAGCGGCACCATCAGCTCCAAAAATCAATTCAACACCACCTATGTCTGGGAGAAAACGTGGAAACGCAATAGTCAGGGAGGAACCAAGAGATGCTTCTATTGAAGCAAGGAGTATTGCTCGTGAAGCTGCGAGAGCTCATCAAATGAGTTTAGCTTCTGGAACTCCGTCGGTCGTCATATCAATGGTCCCTTCGCATGTTTATAGAGTATTTTGGTTGAACCTTCCGAGAAGATTTTGTGATGGTAATCTCCCGGAAACTAAATCGCAACTGACGTTAGAGGATGAGGAAGGCAACGAATTCACGGTTGTCTTTATTCCGGAGCGATATGGGCTGAGTGGAGGGTGGGTGAGCTTTGCGCGGGAAAAAAAGTTGCACGACGGCGACGCCGTAGTGCTTGAACAAATTGAAAAAACTAGACTCAAAGTACATATATTTAGATCAGCAGAACTGTTTCCCAATGTTCAAGCGGAGAGTGCACGCAGCCTTGAGAAGAAGAAGAAGCAGCAGCAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

257

Amino Acids

28.43

Weight (kDa)

9.69

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 146 - 233 9.5e-17 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 1 cut(s) 616
AccIII TCCGGA 1 cut(s) 574
AciI CCGC 3 cut(s) 260, 616, 725
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 642
AfaI GTAC 1 cut(s) 684
AfiI CCNNNNNNNGG 2 cut(s) 131, 302
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 6 cut(s) 288, 359, 475, 656, 665, 722
AjuI GAANNNNNNNTTGG 4 cut(s) 268, 300, 334, 366
AluBI AGCT 8 cut(s) 101, 120, 142, 272, 383, 392, 410, 609
AluI AGCT 8 cut(s) 101, 120, 142, 272, 383, 392, 410, 609
Alw21I GWGCWC 2 cut(s) 394, 736
Alw26I GTCTC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 732
Aor13HI TCCGGA 1 cut(s) 574
ApaLI GTGCAC 1 cut(s) 732
ApeKI GCWGC 4 cut(s) 383, 738, 760, 763
ApoI RAATTY 1 cut(s) 554
ArsI GACNNNNNNTTYG 4 cut(s) 98, 130, 239, 271
AsiGI ACCGGT 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 708
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 1 cut(s) 442
AsuC2I CCSGG 1 cut(s) 509
AsuHPI GGTGA 4 cut(s) 114, 225, 232, 616
AvaII GGWCC 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 736
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 394
BauI CACGAG 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 2 cut(s) 394, 736
BbvI GCAGC 2 cut(s) 370, 750
BccI CCATC 3 cut(s) 103, 274, 491
BceAI ACGGC 2 cut(s) 629, 652
BcnI CCSGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 2 cut(s) 111, 672
BglII AGATCT 1 cut(s) 768
BisI GCNGC 5 cut(s) 261, 384, 739, 761, 764
BlsI GCNGC 5 cut(s) 262, 385, 740, 762, 765
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 5 cut(s) 159, 204, 264, 339, 444
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 230
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpuEI CTTGAG 2 cut(s) 128, 764
BpuMI CCSGG 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 3 cut(s) 124, 214, 574
BsaXI ACNNNNNCTCC 4 cut(s) 298, 328, 588, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 302
Bse118I RCCGGY 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 34, 544
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 131, 302
BseMII CTCAG 1 cut(s) 581
BseSI GKGCMC 1 cut(s) 736
BseXI GCAGC 2 cut(s) 370, 750
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 616
Bsh1285I CGRYCG 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 262
BshTI ACCGGT 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 2 cut(s) 394, 736
BsiSI CCGG 4 cut(s) 125, 215, 509, 575
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 131, 302
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 394, 736
Bsp13I TCCGGA 1 cut(s) 574
Bsp143I GATC 2 cut(s) 695, 768
BspACI CCGC 3 cut(s) 260, 616, 725
BspCNI CTCAG 1 cut(s) 582
BspEI TCCGGA 1 cut(s) 574
BspFNI CGCG 1 cut(s) 616
BspLI GGNNCC 5 cut(s) 159, 204, 264, 339, 444
BspT107I GGYRCC 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 695, 768
BssNI GRCGYC 1 cut(s) 642
BssSI CACGAG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 375
Bst4CI ACNGT 3 cut(s) 25, 562, 708
BstACI GRCGYC 1 cut(s) 642
BstC8I GCNNGC 2 cut(s) 150, 736
BstDEI CTNAG 1 cut(s) 590
BstF5I GGATG 2 cut(s) 34, 544
BstFNI CGCG 1 cut(s) 616
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 2 cut(s) 698, 771
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 2 cut(s) 695, 768
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 5 cut(s) 269, 380, 389, 586, 731
BstNSI RCATGY 2 cut(s) 152, 455
BstSCI CCNGG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 736
BstUI CGCG 1 cut(s) 616
BstV1I GCAGC 2 cut(s) 370, 750
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 768
BstYI RGATCY 1 cut(s) 768
BtsCI GGATG 2 cut(s) 34, 544
Cac8I GCNNGC 2 cut(s) 150, 736
CfoI GCGC 1 cut(s) 616
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 442
CseI GACGC 1 cut(s) 650
Csp6I GTAC 1 cut(s) 683
CspAI ACCGGT 1 cut(s) 124
CviAII CATG 2 cut(s) 149, 452
CviQI GTAC 1 cut(s) 683
DdeI CTNAG 1 cut(s) 590
DpnI GATC 2 cut(s) 697, 770
DpnII GATC 2 cut(s) 695, 768
Ecl136II GAGCTC 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 554
EcoT38I GRGCYC 1 cut(s) 394
FaeI CATG 2 cut(s) 152, 455
FalI AAGNNNNNCTT 2 cut(s) 334, 366
FaqI GGGAC 1 cut(s) 428
FatI CATG 2 cut(s) 148, 451
FauI CCCGC 1 cut(s) 609
Fnu4HI GCNGC 5 cut(s) 261, 384, 739, 761, 764
FokI GGATG 2 cut(s) 21, 551
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 5 cut(s) 261, 384, 739, 761, 764
FspBI CTAG 2 cut(s) 111, 672
GlaI GCGC 1 cut(s) 615
GluI GCNGC 5 cut(s) 261, 384, 739, 761, 764
HapII CCGG 4 cut(s) 125, 215, 509, 575
HgaI GACGC 1 cut(s) 650
HhaI GCGC 1 cut(s) 616
Hin1I GRCGYC 1 cut(s) 642
Hin1II CATG 2 cut(s) 152, 455
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 675
HpaII CCGG 4 cut(s) 125, 215, 509, 575
HphI GGTGA 4 cut(s) 114, 225, 232, 616
Hpy166II GTNNAC 2 cut(s) 6, 734
Hpy188I TCNGA 2 cut(s) 105, 483
Hpy188III TCNNGA 4 cut(s) 87, 377, 414, 575
Hpy8I GTNNAC 2 cut(s) 6, 734
Hpy99I CGWCG 3 cut(s) 427, 638, 644
HpyAV CCTTC 3 cut(s) 456, 488, 539
HpyCH4III ACNGT 3 cut(s) 25, 562, 708
HpyCH4IV ACGT 3 cut(s) 8, 313, 530
HpyCH4V TGCA 3 cut(s) 212, 631, 734
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 380, 389, 586, 731
HpyF3I CTNAG 1 cut(s) 590
HpySE526I ACGT 3 cut(s) 8, 313, 530
Hsp92I GRCGYC 1 cut(s) 642
Hsp92II CATG 2 cut(s) 152, 455
HspAI GCGC 1 cut(s) 614
Kpn2I TCCGGA 1 cut(s) 574
Kzo9I GATC 2 cut(s) 695, 768
LmnI GCTCC 3 cut(s) 106, 277, 577
LpnPI CCDG 8 cut(s) 117, 138, 228, 288, 316, 399, 522, 588
Lsp1109I GCAGC 2 cut(s) 370, 750
LweI GCATC 1 cut(s) 337
MaeI CTAG 2 cut(s) 111, 672
MaeII ACGT 3 cut(s) 8, 313, 530
MalI GATC 2 cut(s) 697, 770
MboI GATC 2 cut(s) 695, 768
MboII GAAGA 5 cut(s) 235, 498, 760, 763, 766
MflI RGATCY 1 cut(s) 768
MhlI GDGCHC 2 cut(s) 394, 736
MluCI AATT 5 cut(s) 30, 165, 283, 554, 660
MlyI GAGTC 1 cut(s) 669
MnlI CCTC 8 cut(s) 148, 211, 246, 252, 328, 529, 535, 590
MroI TCCGGA 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 4 cut(s) 125, 215, 509, 575
MspR9I CCNGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 5 cut(s) 269, 380, 389, 586, 731
NciI CCSGG 1 cut(s) 509
NdeII GATC 2 cut(s) 695, 768
NlaIII CATG 2 cut(s) 152, 455
NlaIV GGNNCC 5 cut(s) 159, 204, 264, 339, 444
NmeAIII GCCGAG 1 cut(s) 178
NspI RCATGY 2 cut(s) 152, 455
PaeI GCATGC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 2 cut(s) 527, 642
PdmI GAANNNNTTC 1 cut(s) 708
PfoI TCCNGGA 1 cut(s) 507
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 5 cut(s) 262, 385, 740, 762, 765
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 394
PspN4I GGNNCC 5 cut(s) 159, 204, 264, 339, 444
PspPI GGNCC 1 cut(s) 442
PsuI RGATCY 1 cut(s) 768
RsaI GTAC 1 cut(s) 684
RsaNI GTAC 1 cut(s) 683
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 5 cut(s) 261, 384, 739, 761, 764
Sau3AI GATC 2 cut(s) 695, 768
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 1 cut(s) 669
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 2 cut(s) 394, 736
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 143, 743
SmoI CTYRAG 2 cut(s) 143, 743
SphI GCATGC 1 cut(s) 152
Sse9I AATT 5 cut(s) 30, 165, 283, 554, 660
SsiI CCGC 3 cut(s) 260, 616, 725
SspMI CTAG 2 cut(s) 111, 672
SstI GAGCTC 1 cut(s) 394
StyD4I CCNGG 1 cut(s) 507
TaaI ACNGT 3 cut(s) 25, 562, 708
TaiI ACGT 3 cut(s) 11, 316, 533
TaqII GACCGA 1 cut(s) 415
TasI AATT 5 cut(s) 30, 165, 283, 554, 660
TatI WGTACW 1 cut(s) 682
TauI GCSGC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseI GCWGC 4 cut(s) 383, 738, 760, 763
TspDTI ATGAA 2 cut(s) 23, 33
TspGWI ACGGA 1 cut(s) 411
VneI GTGCAC 1 cut(s) 732
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 1 cut(s) 554
XceI RCATGY 2 cut(s) 152, 455
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 2 cut(s) 111, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.