Rroxscaffold_5G00370460

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005902
Physical Location & Seq
Forward (+)
52175011 .. 52181421
6411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370460.1

Sequence Viewer

Length: 939 bp
ATGTTTGGCTTTGAAAATTTAATGGGAGAAGAGATTTGGATTGCTGGGAAAAGAGAAGAAAGGTCCCGGGTTCTTCGGTTCTTGATGTCCCAGCCGTTGCACGACTTGAGGCGGCGGCGGGAAGAGGAGGACGAAGAGAACGAGCACGACGACGGCGCGGAGTTGAACTTGAAGAGCGAGAGGTCATGGCTAAGGAAGGAGAAGGAGAATAAGACCACTACGGGGAGAAGTATGGATTGTTTCTACCACATTGAACTTCCTTCATGGGATCTCCAATCACAGAAGTTGGGTTACCTCCCTAGGCTCATCTCGGTCCCGAGCGACATCGTCTTCCACGACCTCACACCTCGGCGTCATGGCGGTCGTATCGGTGGAGGCGGCAACTCCGGCTCCGGAGGCATGGGCGGCGGCGGCGGTGGCTGCAGTGCCGAAAACAACATACTTAGGTTCTACACCGATAACACTCTCGGCTTGAAGATCTCCCCCACCGTCATTCTCGTCATGAGCCTCTGCTTCATCGGCTTCTTCTCGAAGGTTTTCGAATCGAAGAAGGAGAAGAAGAGGTCAAGGTTGGTGATGAGTGATTCGGGGTCGAGTGATGAGCTATTGATGCCGAGGAGGAAAGTTGGGTCGGAGACTATTCGGGTTTGTAATGGTTTGGACAAGGGAATTGTGGAAGGGGCGGAATGGTTACGAAGAGGGAGACAACTGGAGCATGGTAGGCGGAATGAGGATGGTATGATTGGTAAAAATTATTTGGATGATGGTGAAGGAAGGAGAACTAATTTGGAGGTGTTTGAGTTCAATGAGTATGATGGGATTGAGGGACAAACGATGAGAAGGAGTCGGTTTGGTGATGGAGTTATCGGAGTTGAGTTTGGGGAGAGAATAGATAAACAAAAAACAAAAAAAAACAAAAAAAAAAAGAGAAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

312

Amino Acids

35.63

Weight (kDa)

9.04

Isoelectric Point (pI)

74.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 145 - 175 2.9e-09 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 392
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 6 cut(s) 14, 166, 172, 254, 475, 805
AluBI AGCT 1 cut(s) 604
AluI AGCT 1 cut(s) 604
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 629, 697
AlwI GGATC 1 cut(s) 276
Ama87I CYCGRG 2 cut(s) 66, 316
Aor13HI TCCGGA 1 cut(s) 392
ApeKI GCWGC 1 cut(s) 420
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 536
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 63, 313
AsuC2I CCSGG 2 cut(s) 67, 68
AsuHPI GGTGA 3 cut(s) 586, 779, 866
AsuII TTCGAA 1 cut(s) 540
AvaI CYCGRG 2 cut(s) 66, 316
AvaII GGWCC 2 cut(s) 63, 313
AvrII CCTAGG 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 407
BccI CCATC 4 cut(s) 728, 758, 809, 851
BceAI ACGGC 2 cut(s) 79, 169
BcnI CCSGG 2 cut(s) 67, 68
BcoDI GTCTC 2 cut(s) 629, 697
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 421
BglII AGATCT 1 cut(s) 477
BisI GCNGC 7 cut(s) 113, 116, 379, 406, 409, 412, 421
BlnI CCTAGG 1 cut(s) 299
BlsI GCNGC 7 cut(s) 114, 117, 380, 407, 410, 413, 422
Bme1390I CCNGG 2 cut(s) 67, 68
Bme18I GGWCC 2 cut(s) 63, 313
BmeT110I CYCGRG 2 cut(s) 66, 316
BmgT120I GGNCC 2 cut(s) 63, 313
BmiI GGNNCC 3 cut(s) 65, 315, 391
BmrFI CCNGG 2 cut(s) 67, 68
BmsI GCATC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 731
Bpu10I CCTNAGC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 127
BpuMI CCSGG 2 cut(s) 67, 68
BsaHI GRCGYC 1 cut(s) 352
BsaJI CCNNGG 4 cut(s) 66, 299, 347, 614
BsaWI WCCGGW 1 cut(s) 392
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 714
BseAI TCCGGA 1 cut(s) 392
BseDI CCNNGG 4 cut(s) 66, 299, 347, 614
BseGI GGATG 2 cut(s) 739, 766
BseLI CCNNNNNNNGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 714
BseRI GAGGAG 2 cut(s) 140, 631
BseXI GCAGC 1 cut(s) 407
BseYI CCCAGC 2 cut(s) 44, 90
Bsh1236I CGCG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 364
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 2 cut(s) 66, 316
BsiSI CCGG 3 cut(s) 67, 387, 393
BslFI GGGAC 4 cut(s) 49, 73, 299, 840
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 629, 697
BsmFI GGGAC 4 cut(s) 49, 73, 299, 840
BsoBI CYCGRG 2 cut(s) 66, 316
Bsp119I TTCGAA 1 cut(s) 540
Bsp1286I GDGCHC 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 392
Bsp143I GATC 2 cut(s) 268, 477
BspEI TCCGGA 1 cut(s) 392
BspFNI CGCG 1 cut(s) 158
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 3 cut(s) 65, 315, 391
BspMAI CTGCAG 1 cut(s) 425
BspPI GGATC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 540
BsrI ACTGG 1 cut(s) 714
BssECI CCNNGG 4 cut(s) 66, 299, 347, 614
BssMI GATC 2 cut(s) 268, 477
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 6 cut(s) 24, 117, 129, 167, 554, 691
BstACI GRCGYC 1 cut(s) 352
BstBI TTCGAA 1 cut(s) 540
BstDEI CTNAG 2 cut(s) 191, 443
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 2 cut(s) 739, 766
BstFNI CGCG 1 cut(s) 158
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 271, 480
BstMAI GTCTC 2 cut(s) 629, 697
BstMBI GATC 2 cut(s) 268, 477
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 9 cut(s) 387, 396, 405, 411, 417, 420, 519, 610, 721
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 2 cut(s) 65, 66
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 407
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 2 cut(s) 268, 477
BstYI RGATCY 2 cut(s) 268, 477
BtsCI GGATG 2 cut(s) 739, 766
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 430
CciI TCATGA 1 cut(s) 501
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 63, 313
Cfr9I CCCGGG 1 cut(s) 66
CseI GACGC 1 cut(s) 341
CviAII CATG 6 cut(s) 186, 264, 356, 400, 502, 716
DdeI CTNAG 2 cut(s) 191, 443
DpnI GATC 2 cut(s) 270, 479
DpnII GATC 2 cut(s) 268, 477
Eam1104I CTCTTC 6 cut(s) 24, 117, 129, 167, 554, 691
EarI CTCTTC 6 cut(s) 24, 117, 129, 167, 554, 691
EciI GGCGGA 2 cut(s) 698, 739
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 63, 313
Eco88I CYCGRG 2 cut(s) 66, 316
Eco91I GGTNACC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 6 cut(s) 189, 267, 359, 403, 505, 719
FaqI GGGAC 4 cut(s) 49, 73, 299, 840
FatI CATG 6 cut(s) 185, 263, 355, 399, 501, 715
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 7 cut(s) 113, 116, 379, 406, 409, 412, 421
FokI GGATG 2 cut(s) 746, 773
Fsp4HI GCNGC 7 cut(s) 113, 116, 379, 406, 409, 412, 421
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 157
GluI GCNGC 7 cut(s) 113, 116, 379, 406, 409, 412, 421
GsaI CCCAGC 2 cut(s) 48, 94
GsuI CTGGAG 1 cut(s) 731
HapII CCGG 3 cut(s) 67, 387, 393
HgaI GACGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 6 cut(s) 189, 267, 359, 403, 505, 719
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 3 cut(s) 542, 584, 844
HpaII CCGG 3 cut(s) 67, 387, 393
HphI GGTGA 3 cut(s) 586, 779, 866
Hpy188I TCNGA 2 cut(s) 634, 869
Hpy188III TCNNGA 5 cut(s) 82, 316, 393, 502, 529
Hpy99I CGWCG 2 cut(s) 152, 155
HpyAV CCTTC 9 cut(s) 190, 196, 270, 526, 544, 671, 764, 768, 834
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4V TGCA 2 cut(s) 100, 423
HpyF10VI GCNNNNNNNGC 9 cut(s) 387, 396, 405, 411, 417, 420, 519, 610, 721
HpyF3I CTNAG 2 cut(s) 191, 443
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 6 cut(s) 189, 267, 359, 403, 505, 719
HspAI GCGC 1 cut(s) 156
Kpn2I TCCGGA 1 cut(s) 392
Kzo9I GATC 2 cut(s) 268, 477
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 2 cut(s) 395, 712
LpnPI CCDG 6 cut(s) 30, 80, 104, 400, 406, 695
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 1 cut(s) 600
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 290, 690
MalI GATC 2 cut(s) 270, 479
MboI GATC 2 cut(s) 268, 477
MflI RGATCY 2 cut(s) 268, 477
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 4 cut(s) 16, 669, 751, 784
MlyI GAGTC 1 cut(s) 853
MmeI TCCRAC 1 cut(s) 612
MroI TCCGGA 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 1 cut(s) 20
MspI CCGG 3 cut(s) 67, 387, 393
MspR9I CCNGG 2 cut(s) 67, 68
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 9 cut(s) 387, 396, 405, 411, 417, 420, 519, 610, 721
NciI CCSGG 2 cut(s) 67, 68
NdeII GATC 2 cut(s) 268, 477
NlaIII CATG 6 cut(s) 189, 267, 359, 403, 505, 719
NlaIV GGNNCC 3 cut(s) 65, 315, 391
NmeAIII GCCGAG 3 cut(s) 328, 447, 639
NspV TTCGAA 1 cut(s) 540
PagI TCATGA 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 147, 333
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 2 cut(s) 542, 584
PflFI GACNNNGTC 1 cut(s) 326
PkrI GCNGC 7 cut(s) 114, 117, 380, 407, 410, 413, 422
PleI GAGTC 1 cut(s) 852
PpsI GAGTC 1 cut(s) 852
PpuMI RGGWCCY 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 63
PspEI GGTNACC 1 cut(s) 290
PspFI CCCAGC 2 cut(s) 44, 90
PspN4I GGNNCC 3 cut(s) 65, 315, 391
PspPI GGNCC 2 cut(s) 63, 313
PspPPI RGGWCCY 1 cut(s) 63
PstI CTGCAG 1 cut(s) 425
PsuI RGATCY 2 cut(s) 268, 477
PsyI GACNNNGTC 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 7 cut(s) 113, 116, 379, 406, 409, 412, 421
Sau3AI GATC 2 cut(s) 268, 477
Sau96I GGNCC 2 cut(s) 63, 313
SchI GAGTC 1 cut(s) 853
ScrFI CCNGG 2 cut(s) 67, 68
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 1 cut(s) 600
SfcI CTRYAG 1 cut(s) 421
SfuI TTCGAA 1 cut(s) 540
SinI GGWCC 2 cut(s) 63, 313
SmaI CCCGGG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 4 cut(s) 16, 669, 751, 784
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 65, 66
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 490
TaqI TCGA 4 cut(s) 530, 540, 545, 593
TaqII GACCGA 1 cut(s) 301
TasI AATT 4 cut(s) 16, 669, 751, 784
TauI GCSGC 6 cut(s) 115, 118, 381, 408, 411, 414
TfiI GAWTC 2 cut(s) 542, 584
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 430
TseI GCWGC 1 cut(s) 420
TspDTI ATGAA 2 cut(s) 252, 505
TspMI CCCGGG 1 cut(s) 66
TspRI CASTG 1 cut(s) 430
Tth111I GACNNNGTC 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 63, 313
XapI RAATTY 1 cut(s) 16
XmaI CCCGGG 1 cut(s) 66
XmaJI CCTAGG 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.