Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001644.1

Orthogroup ID

OG0005902

Physical Location & Seq

Genomic Coordinates Forward (+)

41030 .. 42067

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001644.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggctcaaggctcatctcagtcccaagcgacgtcgtcttccacgacctcaagcctcggcgtcatggctcctcgtggttcagctgctgccacagctggaatgcacagccgtcgtatcggtggaggcgacaactccagctccagaggcatgggctgcagcggcagtggctctggtgccggaaacaacatactcaggttctacaccgacgacactcttggcttgaagatctcccccaccgtcatgctcgtcatgagcctatgcttcatcggcttcgtcactgccctccacgttttttgcaagctctacctctgggggtccagtgatgagctattgatgccaaggaggaaagttgggtcggagactattcgggtttgtaatggtttggacaagggcattgtggaagggggcggaatggttccgaagagggagagacaggagcatggtaggcggaatgaggatggtatgattggtacaaattatttggatgatggaggagaaggagaactaatttggaggcgtttgagttcaatgagtatgatgggattaagggacaaacgatcagaaagagtcggtttggtgatggagttatcgaagttgagtttggggagagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

204

Amino Acids

21.78

Weight (kDa)

9.23

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005902)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39190 FvH4_6g11810
rosa_chinensis	RchiOBHm_Chr6g0301871
rosa_laevigata	RLG00000006461 RLG00000011214 RLG00000011639 RLG00000024773
rosa_multiflora	Rmu_sc0001644.1_g000007 Rmu_sc0001781.1_g000032 Rmu_sc0002111.1_g000011 Rmu_ssc0000295.1_g000022 Rmu_ssc0000309.1_g000036
rosa_roxburghii	Rroxscaffold_1G00066090 Rroxscaffold_5G00370460 Rroxscaffold_7G00166320
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh1AG084900 Rh1AG401800 Rh2AG279000 Rh3DG271200 Rh4CG167900 Rh6AG422400 Rh6BG176900 Rh6BG429200 Rh6CG134100 Rh6CG435700 Rh6DG422700
rosa_wichuraiana	Rw6G036590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	3 cut(s)	159, 408, 448
AcyI	GRCGYC	2 cut(s)	32, 60
AfaI	GTAC	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	223, 528
AjuI	GAANNNNNNNTTGG	1 cut(s)	584
AluBI	AGCT	5 cut(s)	83, 95, 138, 301, 328
AluI	AGCT	5 cut(s)	83, 95, 138, 301, 328
Alw26I	GTCTC	2 cut(s)	353, 424
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	4 cut(s)	83, 86, 153, 156
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	70, 73, 140, 168
BccI	CCATC	4 cut(s)	452, 482, 532, 574
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BcoDI	GTCTC	2 cut(s)	353, 424
BfmI	CTRYAG	1 cut(s)	154
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	5 cut(s)	84, 87, 154, 157, 160
BlsI	GCNGC	5 cut(s)	85, 88, 155, 158, 161
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	4 cut(s)	69, 175, 316, 417
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	118, 124
BpuEI	CTTGAG	1 cut(s)	34
BsaHI	GRCGYC	2 cut(s)	32, 60
BsaJI	CCNNGG	2 cut(s)	55, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse1I	ACTGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	55, 338
BseGI	GGATG	2 cut(s)	463, 490
BseMII	CTCAG	2 cut(s)	32, 205
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	2 cut(s)	60, 507
BseXI	GCAGC	4 cut(s)	70, 73, 140, 168
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	7, 563
BsmAI	GTCTC	2 cut(s)	353, 424
BsmFI	GGGAC	2 cut(s)	7, 563
BsmI	GAATGC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	225, 557
BspACI	CCGC	3 cut(s)	159, 408, 448
BspCNI	CTCAG	2 cut(s)	31, 204
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	69, 175, 316, 417
BspMAI	CTGCAG	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	55, 338
BssMI	GATC	2 cut(s)	225, 557
BssNI	GRCGYC	2 cut(s)	32, 60
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	2 cut(s)	32, 60
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	18, 191
BstF5I	GGATG	2 cut(s)	463, 490
BstKTI	GATC	2 cut(s)	228, 560
BstMAI	GTCTC	2 cut(s)	353, 424
BstMBI	GATC	2 cut(s)	225, 557
BstMWI	GCNNNNNNNGC	8 cut(s)	92, 144, 153, 159, 165, 267, 334, 445
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	4 cut(s)	70, 73, 140, 168
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	463, 490
BtsI	GCAGTG	2 cut(s)	169, 276
BtsIMutI	CAGTG	3 cut(s)	169, 276, 325
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	471
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	5 cut(s)	64, 148, 241, 250, 440
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	2 cut(s)	18, 191
DpnI	GATC	2 cut(s)	227, 559
DpnII	GATC	2 cut(s)	225, 557
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	2 cut(s)	423, 463
Eco130I	CCWWGG	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	5 cut(s)	67, 151, 244, 253, 443
FaiI	YATR	9 cut(s)	65, 149, 188, 242, 251, 259, 441, 464, 536
FaqI	GGGAC	2 cut(s)	7, 563
FatI	CATG	5 cut(s)	63, 147, 240, 249, 439
Fnu4HI	GCNGC	5 cut(s)	84, 87, 154, 157, 160
FokI	GGATG	2 cut(s)	470, 497
Fsp4HI	GCNGC	5 cut(s)	84, 87, 154, 157, 160
GluI	GCNGC	5 cut(s)	84, 87, 154, 157, 160
GsuI	CTGGAG	2 cut(s)	118, 124
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	49
Hin1I	GRCGYC	2 cut(s)	32, 60
Hin1II	CATG	5 cut(s)	67, 151, 244, 253, 443
HinfI	GANTC	1 cut(s)	567
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	358, 420, 562
Hpy188III	TCNNGA	2 cut(s)	141, 250
Hpy99I	CGWCG	4 cut(s)	34, 37, 114, 209
HpyAV	CCTTC	2 cut(s)	395, 491
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	32, 288
HpyCH4V	TGCA	3 cut(s)	103, 156, 297
HpyF10VI	GCNNNNNNNGC	8 cut(s)	92, 144, 153, 159, 165, 267, 334, 445
HpyF3I	CTNAG	2 cut(s)	18, 191
HpySE526I	ACGT	2 cut(s)	32, 288
Hsp92I	GRCGYC	2 cut(s)	32, 60
Hsp92II	CATG	5 cut(s)	67, 151, 244, 253, 443
Kzo9I	GATC	2 cut(s)	225, 557
LmnI	GCTCC	3 cut(s)	73, 143, 436
LpnPI	CCDG	9 cut(s)	81, 148, 154, 156, 178, 190, 295, 331, 419
Lsp1109I	GCAGC	4 cut(s)	70, 73, 140, 168
LweI	GCATC	1 cut(s)	324
MaeII	ACGT	2 cut(s)	32, 288
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	227, 559
MboI	GATC	2 cut(s)	225, 557
MboII	GAAGA	3 cut(s)	30, 235, 433
MflI	RGATCY	1 cut(s)	225
MluCI	AATT	2 cut(s)	475, 507
MlyI	GAGTC	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	336
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	3 cut(s)	83, 95, 159
MspI	CCGG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	105
MwoI	GCNNNNNNNGC	8 cut(s)	92, 144, 153, 159, 165, 267, 334, 445
NdeII	GATC	2 cut(s)	225, 557
NlaIII	CATG	5 cut(s)	67, 151, 244, 253, 443
NlaIV	GGNNCC	4 cut(s)	69, 175, 316, 417
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 123
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	5 cut(s)	85, 88, 155, 158, 161
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
PspN4I	GGNNCC	4 cut(s)	69, 175, 316, 417
PspPI	GGNCC	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	225
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	83, 95
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	5 cut(s)	84, 87, 154, 157, 160
Sau3AI	GATC	2 cut(s)	225, 557
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	1 cut(s)	576
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	6, 49
SmoI	CTYRAG	2 cut(s)	6, 49
Sse9I	AATT	2 cut(s)	475, 507
SsiI	CCGC	3 cut(s)	159, 408, 448
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	35, 291
TaqI	TCGA	1 cut(s)	590
TasI	AATT	2 cut(s)	475, 507
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	3 cut(s)	169, 283, 325
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	4 cut(s)	83, 86, 153, 156
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	253
TspRI	CASTG	3 cut(s)	169, 283, 325
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	315
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.