Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003148

Physical Location & Seq

Genomic Coordinates Reverse (-)

7995407 .. 8000828

Gene Structure 5422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3345 bp

ATGAGGAGTGGTGGGAGAAAGAGAAGGCTGCATTTCAGCAAGATCTATTCTTTCACTTGCGGTAGAGCTTCTTTGAAGGAGGAGCATTCACAGATTGGAGGGCCAGGATTTTCCAGAGTGGTTTTCTGCAACGAACCGGATTCGTTTGAGGCCGGGATTCGAAACTATGCAGATAATTATGTCAGCACTACTAAGTACACACTCGCTACATTCTTGCCCAAGTCTTTGTTTGAGCAGTTCAGGAGGGTAGCTAACTTCTTCTTCTTGGTCACTGGCGTTTTGGCCTTCACTCCTCTGGCTCCGTATTCAGCTGTCAGTGCCATAGTTCCTCTGATCATCATCATTAGCGCCACGATGGTGAAGGAGGGGATCGAAGATTGGCGTCGAAAACAGCAGGATATTGAAGTGAACAATAGAAAGGTTAAAGTGCATAAGGGTGGTGGCAATTTTGATTATACTGAATGGAAGAATCTGAGAGTGGGAGATATAGTGAGAGTGGAAAAGGATGAATTCTTTCCAACAGATCTCCTGTTACTTTCGTCCAGTTACGAAGATGCAATCTGCTATGTTGAGACAATGAACCTTGATGGGGAGACAAACTTAAAGTTGAAACAAGCATTGGAGGTAACTTCACCGTTACAGGAGGACACCAGCATCAGCAATTTTCATGCCATGGTGAAATGTGAGGACCCAAATGCAAATTTGTACTCATTTGTCGGAACTATGGAGTTTGAAAAGCAGCAGTATCCCCTCTCTCCTCAACAGCTTCTTCTCAGAGACTCTAAACTCCGAAATACAGACTACATATTCGGCGTGGTTATCTTCACCGGTGTTGATACAAAGGTTATTCAAAACTCTACTCCCCCTCCTTCAAAAAGAAGCAGAGTTGAGAAGAAGATGGATCAAATTATCTACGTCTTGTTTGGTGTTTTATTTACATTGGCATCAGTTGGATCCATTTTCTTTGGCATTACAACCAAAGATGACATAAACAATGGGATCATGAAAAGGTGGTATCTGAAGCCAGATAGTTCTGAAATTTTCTATGATCCCAAAAGGGCTCCTGTTGCAGCAATTTATCACTTCTTGACTGCTCTGATGTTATATAACTACTTCATCCCTATCTCCTTGTATGTGTCAATCGAAATTGTTAAAGTTCTTCAGAGCATCTTCATCAATCAAGATATTCACATGTACTATGAAGAAGCTGATAAACCAGCACATGCCCGTACCTCAAACTTGAATGAAGAACTTGGCCAAGTTGACACCATTCTTTCAGACAAGACTGGAACTTTGACATGCAATTCAATGGAGTTCATCAAATGTTCTGTGGCTGGAACAGCTTACGGCCGTGGTTTTACTGAGGTTGAGAGGTCTATGGGCAGGCGAAATGGTTCACCAATTCATGAAGCTGTAAGTGGAGGGAATGATGACACGGCACCTGTTAAAGGCTTTAATTTTAAAGATGAAAGGATCATGAATGGAAATTGGGTTGATGAGCCTCATGGAGATCTCATCCAGAAATTTTTCCGCTTATTAGCAGTCTGCCATACAGCCATTCCAGAAGTTGATGAAGTGACTGGGAAGGTTATGTATGAGGCTGAGTCTCCTGATGAAGCAGCATTTGTGATTGCAGCAAGAGAACTTGGTTTTGAATTCTATAAAAGGACACAAACAAGCATATCAGTGAGAGAATTGGACAGAGCCTCTGGAAAGAAAGTTGATAGGTTGTACACTCTTCTGAATGTGTTAGAATTCAACAGCTCAAGGAAACGGATGTCTGTGATTGTAAGAAATGAGGAAGGAAAAGTACTATTGCTCTGTAAAGGTGCCGACAATGTCATGTTTGAAAGACTTGCCAAAAATGGTAGGGAGTTTGAAGAAGAGACCAAGGAGCATTTAAATGGGTATGCTGATGCAGGGCTAAGGACTTTGATACTTGCCTATCGTGAACTTCAGGAAGATGAATACAGACAGTTTAATGCAAAATTTATTGAGGCCAAGAACTCAATTAGTGCAGACCGCGAAACATTGATTGATGAAGTAACAGATAATGTTGAAAAAGATCTAATTCTTCTTGGTGCGACAGCTGTTGAGGACAAACTTCAAAATGGGGTTCCCGATTGCATCGACAAGCTTGCCCAAGCAGGAATTAAGATTTGGGTTTTGACTGGAGATAAAATGGAAACTGCCATCAACATTGGGTTTGCCTGTAGCTTACTTAGACAAGGAATGAAACAGGTTATGATAAATTTGGAGTCTCCAGAAATTAAGGTGCTGGAAAAGGAAGGAGATAAGGATGCCATTACCGAGGTCACTAGACTGGTCAAATCTGGAACTGGGAAAACAACTCTTGCGATTGGTGATGGTGCCAATGATGTGGGAATGCTCCAAGAAGCAGATATTGGGATTGGAATTAGTGGTGTTGAAGGAATGCAGGCGGTCATGTCAAGTGATATTGCGATTGCACAATTTCAATATTTGGAGCGTCTGCTGCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCATCAATGATTTGCTACTTCTTCTACAAGAACATCACATTTGGTTTAACTATCTTCTTATATGAGGCATCCGCATCCTTCTCTGGACAACCTGCATACAATGACTGGTTTTTATCACTGTATAACGTATTCTTCTCATCGCTTCCAGTGGTTGCCATGGGAGTTTTCGACCAGGATGTTTCTGCACGATTTTGTCTCAAGTTTCCTCTAATATACCAAGAAGGGGTGCAAAATGTTCTCTTCAGCTGGCGTAGAATAATCGGTTGGATGTTGAATGGATTCACAAGCGCAGTGATTATTTTCTTTTTCTGCATGAAAGCGCTACAACCATATGCCTTCAATCAGGATGGGAAAACTGCTGGGAAGGATATTCTAGGAGCAACAATGTACACATGCATCGTTTGGGTTGTGAACTTGCAGATGGCACTTGCCATAAGTTACTTCACCTTGATACAACACCTTTTCATCTGGGGTTCCATTGCTCTCTGGTATCTTTTTATGTTAGCATATGGAGCTATGTCACCCACGCTCTCTACCAATGCATACAAAGTCTTCGTCGAAACCCTTGCCCCCACCCCGTCTTTCTGGCTTATTACATTGCTTGTGCCAATCTCAGCTCTACTCCCATATTTCACATACTCATCACTTCAGATGCGGTTCTTTCCTTTGTATCATAACGTGATACAATGGATTAGGTACGAGGGGCGGTCAAATGATCCAGAGTTTTGTGATATGGTGCGGCAGAGATCTTTGCGGCCAACAACCGTGGGTTTCACAGCACGGTTAGCTGCTAGGACCAACATTATAAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

1115

Amino Acids

126.21

Weight (kDa)

6.06

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	41 - 108	2.7e-22	Phospholipid-translocating ATPase N-terminal
Cation_ATPase	PF13246	507 - 703	3.7e-19	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	646 - 801	1.3e-09	haloacid dehalogenase-like hydrolase
PhoLip_ATPase_C	PF16212	815 - 1065	2.8e-87	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13210 AT1G26130 AT1G26130 AT1G26130 AT1G26130 AT1G68710 AT1G68710 AT1G68710 AT3G25610
fragaria_vesca	FvH4_4g28450 FvH4_5g12920 FvH4_5g12920
malus_domestica	MD06G1209100.v1.1 MD13G1050400.v1.1 MD14G1219500.v1.1 MD16G1051100.v1.1
prunus_persica	Prupe.1G301500_v2.0.a1 Prupe.5G214200_v2.0.a1
pyrus_communis	pycom06g18670 pycom14g18190 pycom16g04490
rosa_chinensis	RchiOBHm_Chr4g0436411 RchiOBHm_Chr7g0184301
rosa_laevigata	RLG00000004988 RLG00000006521
rosa_multiflora	Rmu_sc0000579.1_g000001 Rmu_sc0013812.1_g000007
rosa_roxburghii	Rroxscaffold_3G00269750 Rroxscaffold_5G00377570
rosa_rugosa	Rorug04G0293600
rosa_samantha	Rh4AG348000 Rh4CG371300 Rh7AG081300 Rh7CG066300 Rh7DG065900
rosa_wichuraiana	Rw4G030420 Rw7G005410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3335
Acc36I	ACCTGC	1 cut(s)	2629
AccB1I	GGYRCC	3 cut(s)	1438, 1829, 2369
AccII	CGCG	1 cut(s)	2025
AciI	CCGC	9 cut(s)	60, 1531, 2023, 2441, 2601, 3184, 3235, 3268, 3283
AclWI	GGATC	9 cut(s)	377, 909, 948, 961, 1007, 1043, 1481, 2534, 3239
AcoI	YGGCCR	3 cut(s)	1255, 1348, 3284
AcsI	RAATTY	8 cut(s)	509, 700, 1038, 1523, 1655, 1754, 1988, 2251
AcuI	CTGAAG	5 cut(s)	1040, 1145, 1940, 2755, 3161
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	8 cut(s)	197, 707, 1196, 1231, 1733, 1812, 2918, 3227
AfeI	AGCGCT	1 cut(s)	2850
AfiI	CCNNNNNNNGG	3 cut(s)	589, 1448, 2752
AflIII	ACRYGT	1 cut(s)	1191
AgeI	ACCGGT	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	103, 2700
AjuI	GAANNNNNNNTTGG	8 cut(s)	602, 634, 2143, 2175, 2388, 2420, 2776, 2808
AleI	CACNNNNGTG	1 cut(s)	356
Alw26I	GTCTC	7 cut(s)	566, 587, 771, 1611, 1880, 2265, 2729
AlwI	GGATC	9 cut(s)	377, 909, 948, 961, 1007, 1043, 1481, 2534, 3239
Aor51HI	AGCGCT	1 cut(s)	2850
AoxI	GGCC	7 cut(s)	101, 150, 282, 1255, 1348, 1998, 3284
ApeKI	GCWGC	7 cut(s)	28, 739, 1070, 1619, 1634, 2494, 3317
ApoI	RAATTY	8 cut(s)	509, 700, 1038, 1523, 1655, 1754, 1988, 2251
ArsI	GACNNNNNNTTYG	6 cut(s)	791, 823, 1276, 1308, 3069, 3101
AsiGI	ACCGGT	1 cut(s)	827
Asp700I	GAANNNNTTC	4 cut(s)	513, 1393, 1526, 2807
AspLEI	GCGC	3 cut(s)	350, 2819, 2851
AspS9I	GGNCC	3 cut(s)	101, 688, 3324
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	8 cut(s)	370, 624, 688, 817, 1389, 2375, 2965, 3042
AsuII	TTCGAA	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	688, 3324
BaeI	ACNNNNGTAYC	2 cut(s)	828, 861
BalI	TGGCCA	1 cut(s)	1257
BamHI	GGATCC	1 cut(s)	953
BanI	GGYRCC	3 cut(s)	1438, 1829, 2369
BanII	GRGCYC	1 cut(s)	1063
BarI	GAAGNNNNNNTAC	2 cut(s)	1794, 1826
BbsI	GAAGAC	1 cut(s)	3073
BbvI	GCAGC	7 cut(s)	15, 751, 1082, 1631, 1646, 2481, 3304
BccI	CCATC	7 cut(s)	349, 581, 892, 2201, 2360, 2870, 2944
BceAI	ACGGC	3 cut(s)	1335, 1363, 1452
BcgI	CGANNNNNNTGC	4 cut(s)	2120, 2154, 3077, 3111
BciT130I	CCWGG	2 cut(s)	105, 2702
BciVI	GTATCC	1 cut(s)	756
BclI	TGATCA	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	7 cut(s)	566, 587, 771, 1611, 1880, 2265, 2729
BfaI	CTAG	3 cut(s)	2319, 2903, 3321
BfmI	CTRYAG	1 cut(s)	2212
BfoI	RGCGCY	2 cut(s)	351, 2852
BfuAI	ACCTGC	1 cut(s)	2629
BfuI	GTATCC	1 cut(s)	756
BglII	AGATCT	5 cut(s)	42, 523, 1510, 2065, 3275
BisI	GCNGC	9 cut(s)	29, 740, 1071, 1620, 1635, 2495, 3269, 3284, 3318
BlsI	GCNGC	9 cut(s)	30, 741, 1072, 1621, 1636, 2496, 3270, 3285, 3319
BmcAI	AGTACT	1 cut(s)	1812
Bme1390I	CCNGG	3 cut(s)	105, 154, 2702
Bme18I	GGWCC	2 cut(s)	688, 3324
BmgT120I	GGNCC	3 cut(s)	101, 688, 3324
BmiI	GGNNCC	9 cut(s)	300, 690, 955, 1062, 1440, 1831, 2118, 2371, 3004
BmrFI	CCNGG	3 cut(s)	105, 154, 2702
BmrI	ACTGGG	2 cut(s)	1590, 2349
BmuI	ACTGGG	2 cut(s)	1590, 2349
BpiI	GAAGAC	1 cut(s)	3073
BpmI	CTGGAG	2 cut(s)	2193, 2247
Bpu10I	CCTNAGC	1 cut(s)	1925
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	2 cut(s)	1750, 2711
BpuMI	CCSGG	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	1880
BsaJI	CCNNGG	6 cut(s)	672, 1351, 1890, 2310, 2685, 3294
BsaWI	WCCGGW	2 cut(s)	136, 827
BsaXI	ACNNNNNCTCC	4 cut(s)	474, 504, 850, 880
Bsc4I	CCNNNNNNNGG	3 cut(s)	589, 1448, 2752
Bse118I	RCCGGY	1 cut(s)	827
Bse1I	ACTGG	9 cut(s)	277, 543, 1291, 1585, 2176, 2328, 2344, 2639, 2675
Bse3DI	GCAATG	2 cut(s)	3006, 3125
Bse8I	GATNNNNATC	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	105, 2702
BseDI	CCNNGG	6 cut(s)	672, 1351, 1890, 2310, 2685, 3294
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	3 cut(s)	589, 1448, 2752
BseMI	GCAATG	2 cut(s)	3006, 3125
BseMII	CTCAG	5 cut(s)	464, 787, 1353, 1593, 3156
BseNI	ACTGG	9 cut(s)	277, 543, 1291, 1585, 2176, 2328, 2344, 2639, 2675
BseRI	GAGGAG	4 cut(s)	19, 95, 282, 747
BseX3I	CGGCCG	1 cut(s)	1348
BseXI	GCAGC	7 cut(s)	15, 751, 1082, 1631, 1646, 2481, 3304
BseYI	CCCAGC	1 cut(s)	2888
BsgI	GTGCAG	2 cut(s)	2037, 2697
Bsh1236I	CGCG	1 cut(s)	2025
Bsh1285I	CGRYCG	1 cut(s)	1351
BshFI	GGCC	7 cut(s)	103, 152, 284, 1257, 1350, 2000, 3286
BshNI	GGYRCC	3 cut(s)	1438, 1829, 2369
BshTI	ACCGGT	1 cut(s)	827
BsiEI	CGRYCG	1 cut(s)	1351
BsiSI	CCGG	3 cut(s)	137, 153, 828
BslI	CCNNNNNNNGG	3 cut(s)	589, 1448, 2752
BsmAI	GTCTC	7 cut(s)	566, 587, 771, 1611, 1880, 2265, 2729
BsmI	GAATGC	3 cut(s)	85, 2391, 2439
BsnI	GGCC	7 cut(s)	103, 152, 284, 1257, 1350, 2000, 3286
Bso31I	GGTCTC	1 cut(s)	1880
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	1063
Bsp1407I	TGTACA	2 cut(s)	1731, 2916
Bsp19I	CCATGG	2 cut(s)	672, 2685
BspACI	CCGC	9 cut(s)	60, 1531, 2023, 2441, 2601, 3184, 3235, 3268, 3283
BspANI	GGCC	7 cut(s)	103, 152, 284, 1257, 1350, 2000, 3286
BspCNI	CTCAG	5 cut(s)	465, 786, 1354, 1594, 3155
BspFNI	CGCG	1 cut(s)	2025
BspHI	TCATGA	3 cut(s)	1002, 1405, 1476
BspLI	GGNNCC	9 cut(s)	300, 690, 955, 1062, 1440, 1831, 2118, 2371, 3004
BspMI	ACCTGC	1 cut(s)	2629
BspPI	GGATC	9 cut(s)	377, 909, 948, 961, 1007, 1043, 1481, 2534, 3239
BspT104I	TTCGAA	1 cut(s)	160
BspT107I	GGYRCC	3 cut(s)	1438, 1829, 2369
BspTNI	GGTCTC	1 cut(s)	1880
BsrDI	GCAATG	2 cut(s)	3006, 3125
BsrFI	RCCGGY	1 cut(s)	827
BsrGI	TGTACA	2 cut(s)	1731, 2916
BsrI	ACTGG	9 cut(s)	277, 543, 1291, 1585, 2176, 2328, 2344, 2639, 2675
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	6 cut(s)	672, 1351, 1890, 2310, 2685, 3294
BssNI	GRCGYC	1 cut(s)	382
BssT1I	CCWWGG	3 cut(s)	672, 1890, 2685
Bst2UI	CCWGG	2 cut(s)	105, 2702
Bst4CI	ACNGT	5 cut(s)	636, 1977, 2649, 3295, 3312
Bst6I	CTCTTC	3 cut(s)	1743, 1878, 2774
BstACI	GRCGYC	1 cut(s)	382
BstAUI	TGTACA	2 cut(s)	1731, 2916
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	4 cut(s)	1385, 2139, 2439, 2777
BstDEI	CTNAG	8 cut(s)	192, 473, 773, 1362, 1602, 1925, 2222, 3142
BstDSI	CCRYGG	4 cut(s)	672, 1351, 2685, 3294
BstENI	CCTNNNNNAGG	1 cut(s)	1446
BstFNI	CGCG	1 cut(s)	2025
BstH2I	RGCGCY	2 cut(s)	351, 2852
BstHHI	GCGC	3 cut(s)	350, 2819, 2851
BstMAI	GTCTC	7 cut(s)	566, 587, 771, 1611, 1880, 2265, 2729
BstMCI	CGRYCG	1 cut(s)	1351
BstMWI	GCNNNNNNNGC	7 cut(s)	317, 1067, 1340, 2494, 2500, 3041, 3314
BstNI	CCWGG	2 cut(s)	105, 2702
BstNSI	RCATGY	4 cut(s)	1195, 1226, 1302, 2925
BstSCI	CCNGG	3 cut(s)	103, 152, 2700
BstSFI	CTRYAG	1 cut(s)	2212
BstUI	CGCG	1 cut(s)	2025
BstV1I	GCAGC	7 cut(s)	15, 751, 1082, 1631, 1646, 2481, 3304
BstV2I	GAAGAC	1 cut(s)	3073
BstX2I	RGATCY	7 cut(s)	42, 523, 953, 1510, 2065, 2526, 3275
BstXI	CCANNNNNNTGG	1 cut(s)	2380
BstYI	RGATCY	7 cut(s)	42, 523, 953, 1510, 2065, 2526, 3275
BstZI	CGGCCG	1 cut(s)	1348
BsuI	GTATCC	1 cut(s)	756
BsuRI	GGCC	7 cut(s)	103, 152, 284, 1257, 1350, 2000, 3286
BtgI	CCRYGG	4 cut(s)	672, 1351, 2685, 3294
BtgZI	GCGATG	1 cut(s)	2652
BtsI	GCAGTG	1 cut(s)	2826
BtsIMutI	CAGTG	6 cut(s)	270, 322, 1692, 2645, 2682, 2826
BveI	ACCTGC	1 cut(s)	2629
Cac8I	GCNNGC	4 cut(s)	1385, 2139, 2439, 2777
CciI	TCATGA	3 cut(s)	1002, 1405, 1476
CfoI	GCGC	3 cut(s)	350, 2819, 2851
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	3 cut(s)	101, 688, 3324
CseI	GACGC	2 cut(s)	371, 2477
Csp6I	GTAC	8 cut(s)	196, 706, 1195, 1230, 1732, 1811, 2917, 3226
CspAI	ACCGGT	1 cut(s)	827
CspCI	CAANNNNNGTGG	2 cut(s)	3276, 3311
CviQI	GTAC	8 cut(s)	196, 706, 1195, 1230, 1732, 1811, 2917, 3226
DdeI	CTNAG	8 cut(s)	192, 473, 773, 1362, 1602, 1925, 2222, 3142
DraI	TTTAAA	2 cut(s)	1462, 1902
EaeI	YGGCCR	3 cut(s)	1255, 1348, 3284
EagI	CGGCCG	1 cut(s)	1348
Eam1104I	CTCTTC	3 cut(s)	1743, 1878, 2774
EarI	CTCTTC	3 cut(s)	1743, 1878, 2774
EclXI	CGGCCG	1 cut(s)	1348
Eco130I	CCWWGG	3 cut(s)	672, 1890, 2685
Eco24I	GRGCYC	1 cut(s)	1063
Eco31I	GGTCTC	1 cut(s)	1880
Eco47I	GGWCC	2 cut(s)	688, 3324
Eco47III	AGCGCT	1 cut(s)	2850
Eco52I	CGGCCG	1 cut(s)	1348
Eco57I	CTGAAG	5 cut(s)	1040, 1145, 1940, 2755, 3161
EcoNI	CCTNNNNNAGG	1 cut(s)	1446
EcoO109I	RGGNCCY	1 cut(s)	688
EcoRI	GAATTC	3 cut(s)	509, 1655, 1754
EcoRII	CCWGG	2 cut(s)	103, 2700
EcoT14I	CCWWGG	3 cut(s)	672, 1890, 2685
EcoT22I	ATGCAT	2 cut(s)	2927, 3073
EcoT38I	GRGCYC	1 cut(s)	1063
ErhI	CCWWGG	3 cut(s)	672, 1890, 2685
FauNDI	CATATG	2 cut(s)	2860, 3037
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	9 cut(s)	29, 740, 1071, 1620, 1635, 2495, 3269, 3284, 3318
FriOI	GRGCYC	1 cut(s)	1063
Fsp4HI	GCNGC	9 cut(s)	29, 740, 1071, 1620, 1635, 2495, 3269, 3284, 3318
FspBI	CTAG	3 cut(s)	2319, 2903, 3321
GlaI	GCGC	3 cut(s)	349, 2818, 2850
GluI	GCNGC	9 cut(s)	29, 740, 1071, 1620, 1635, 2495, 3269, 3284, 3318
GsaI	CCCAGC	1 cut(s)	2892
GsuI	CTGGAG	2 cut(s)	2193, 2247
HaeII	RGCGCY	2 cut(s)	351, 2852
HaeIII	GGCC	7 cut(s)	103, 152, 284, 1257, 1350, 2000, 3286
HapII	CCGG	3 cut(s)	137, 153, 828
HgaI	GACGC	2 cut(s)	371, 2477
HhaI	GCGC	3 cut(s)	350, 2819, 2851
Hin1I	GRCGYC	1 cut(s)	382
Hin6I	GCGC	3 cut(s)	348, 2817, 2849
HinP1I	GCGC	3 cut(s)	348, 2817, 2849
HincII	GTYRAC	1 cut(s)	1264
HindII	GTYRAC	1 cut(s)	1264
HindIII	AAGCTT	1 cut(s)	2135
HinfI	GANTC	7 cut(s)	140, 157, 469, 779, 1604, 2258, 2808
HpaII	CCGG	3 cut(s)	137, 153, 828
HphI	GGTGA	8 cut(s)	370, 624, 688, 817, 1389, 2375, 2965, 3042
Hpy166II	GTNNAC	8 cut(s)	198, 409, 1264, 1397, 1734, 1952, 2919, 2941
Hpy8I	GTNNAC	8 cut(s)	198, 409, 1264, 1397, 1734, 1952, 2919, 2941
Hpy99I	CGWCG	2 cut(s)	387, 3089
HpyCH4III	ACNGT	5 cut(s)	636, 1977, 2649, 3295, 3312
HpyCH4IV	ACGT	3 cut(s)	915, 2655, 3207
HpyF10VI	GCNNNNNNNGC	7 cut(s)	317, 1067, 1340, 2494, 2500, 3041, 3314
HpyF3I	CTNAG	8 cut(s)	192, 473, 773, 1362, 1602, 1925, 2222, 3142
HpySE526I	ACGT	3 cut(s)	915, 2655, 3207
Hsp92I	GRCGYC	1 cut(s)	382
HspAI	GCGC	3 cut(s)	348, 2817, 2849
Ksp22I	TGATCA	1 cut(s)	333
LmnI	GCTCC	8 cut(s)	82, 304, 1066, 1894, 2394, 2485, 2906, 3041
Lsp1109I	GCAGC	7 cut(s)	15, 751, 1082, 1631, 1646, 2481, 3304
MaeI	CTAG	3 cut(s)	2319, 2903, 3321
MaeII	ACGT	3 cut(s)	915, 2655, 3207
MflI	RGATCY	7 cut(s)	42, 523, 953, 1510, 2065, 2526, 3275
MhlI	GDGCHC	1 cut(s)	1063
MlsI	TGGCCA	1 cut(s)	1257
MluNI	TGGCCA	1 cut(s)	1257
MlyI	GAGTC	3 cut(s)	773, 1613, 2267
MmeI	TCCRAC	4 cut(s)	542, 697, 931, 2774
Mox20I	TGGCCA	1 cut(s)	1257
Mph1103I	ATGCAT	2 cut(s)	2927, 3073
MroXI	GAANNNNTTC	4 cut(s)	513, 1393, 1526, 2807
MscI	TGGCCA	1 cut(s)	1257
MslI	CAYNNNNRTG	4 cut(s)	356, 435, 1685, 1902
Msp20I	TGGCCA	1 cut(s)	1257
MspA1I	CMGCKG	3 cut(s)	311, 2090, 2775
MspI	CCGG	3 cut(s)	137, 153, 828
MspR9I	CCNGG	3 cut(s)	105, 154, 2702
Mva1269I	GAATGC	3 cut(s)	85, 2391, 2439
MvaI	CCWGG	2 cut(s)	105, 2702
MvnI	CGCG	1 cut(s)	2025
MwoI	GCNNNNNNNGC	7 cut(s)	317, 1067, 1340, 2494, 2500, 3041, 3314
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	2 cut(s)	672, 2685
NdeI	CATATG	2 cut(s)	2860, 3037
NlaIV	GGNNCC	9 cut(s)	300, 690, 955, 1062, 1440, 1831, 2118, 2371, 3004
NmuCI	GTSAC	4 cut(s)	268, 1576, 2314, 3048
NsiI	ATGCAT	2 cut(s)	2927, 3073
NspI	RCATGY	4 cut(s)	1195, 1226, 1302, 2925
NspV	TTCGAA	1 cut(s)	160
OliI	CACNNNNGTG	1 cut(s)	356
PagI	TCATGA	3 cut(s)	1002, 1405, 1476
PciI	ACATGT	1 cut(s)	1191
PctI	GAATGC	3 cut(s)	85, 2391, 2439
PdmI	GAANNNNTTC	4 cut(s)	513, 1393, 1526, 2807
PfeI	GAWTC	4 cut(s)	140, 157, 469, 2808
PflFI	GACNNNGTC	1 cut(s)	1838
PinAI	ACCGGT	1 cut(s)	827
PkrI	GCNGC	9 cut(s)	30, 741, 1072, 1621, 1636, 2496, 3270, 3285, 3319
PleI	GAGTC	3 cut(s)	773, 1612, 2266
PpsI	GAGTC	3 cut(s)	773, 1612, 2266
PpuMI	RGGWCCY	1 cut(s)	688
PscI	ACATGT	1 cut(s)	1191
PsiI	TTATAA	1 cut(s)	3335
Psp5II	RGGWCCY	1 cut(s)	688
Psp6I	CCWGG	2 cut(s)	103, 2700
PspFI	CCCAGC	1 cut(s)	2888
PspGI	CCWGG	2 cut(s)	103, 2700
PspN4I	GGNNCC	9 cut(s)	300, 690, 955, 1062, 1440, 1831, 2118, 2371, 3004
PspPI	GGNCC	3 cut(s)	101, 688, 3324
PspPPI	RGGWCCY	1 cut(s)	688
PsuI	RGATCY	7 cut(s)	42, 523, 953, 1510, 2065, 2526, 3275
PsyI	GACNNNGTC	1 cut(s)	1838
PvuII	CAGCTG	3 cut(s)	311, 2090, 2775
RsaI	GTAC	8 cut(s)	197, 707, 1196, 1231, 1733, 1812, 2918, 3227
RsaNI	GTAC	8 cut(s)	196, 706, 1195, 1230, 1732, 1811, 2917, 3226
RseI	CAYNNNNRTG	4 cut(s)	356, 435, 1685, 1902
SatI	GCNGC	9 cut(s)	29, 740, 1071, 1620, 1635, 2495, 3269, 3284, 3318
Sau96I	GGNCC	3 cut(s)	101, 688, 3324
ScaI	AGTACT	1 cut(s)	1812
SchI	GAGTC	3 cut(s)	773, 1613, 2267
ScrFI	CCNGG	3 cut(s)	105, 154, 2702
SduI	GDGCHC	1 cut(s)	1063
SfcI	CTRYAG	1 cut(s)	2212
SfuI	TTCGAA	1 cut(s)	160
SgrAI	CRCCGGYG	1 cut(s)	827
SinI	GGWCC	2 cut(s)	688, 3324
SmiI	ATTTAAAT	1 cut(s)	1902
SmiMI	CAYNNNNRTG	4 cut(s)	356, 435, 1685, 1902
SmlI	CTYRAG	2 cut(s)	1765, 2726
SmoI	CTYRAG	2 cut(s)	1765, 2726
SsiI	CCGC	9 cut(s)	60, 1531, 2023, 2441, 2601, 3184, 3235, 3268, 3283
SspI	AATATT	1 cut(s)	2480
SspMI	CTAG	3 cut(s)	2319, 2903, 3321
StyD4I	CCNGG	3 cut(s)	103, 152, 2700
StyI	CCWWGG	3 cut(s)	672, 1890, 2685
SwaI	ATTTAAAT	1 cut(s)	1902
TaaI	ACNGT	5 cut(s)	636, 1977, 2649, 3295, 3312
TaiI	ACGT	3 cut(s)	918, 2658, 3210
TaqI	TCGA	7 cut(s)	160, 372, 385, 1143, 2130, 2697, 3087
TatI	WGTACW	6 cut(s)	195, 705, 1194, 1731, 1810, 2916
TauI	GCSGC	2 cut(s)	3271, 3286
TfiI	GAWTC	4 cut(s)	140, 157, 469, 2808
TscAI	CASTG	6 cut(s)	277, 322, 1692, 2652, 2682, 2826
TseFI	GTSAC	4 cut(s)	268, 1576, 2314, 3048
TseI	GCWGC	7 cut(s)	28, 739, 1070, 1619, 1634, 2494, 3317
Tsp45I	GTSAC	4 cut(s)	268, 1576, 2314, 3048
TspGWI	ACGGA	2 cut(s)	291, 1789
TspRI	CASTG	6 cut(s)	277, 322, 1692, 2652, 2682, 2826
Tth111I	GACNNNGTC	1 cut(s)	1838
VpaK11BI	GGWCC	2 cut(s)	688, 3324
XagI	CCTNNNNNAGG	1 cut(s)	1446
XapI	RAATTY	8 cut(s)	509, 700, 1038, 1523, 1655, 1754, 1988, 2251
XceI	RCATGY	4 cut(s)	1195, 1226, 1302, 2925
XmnI	GAANNNNTTC	4 cut(s)	513, 1393, 1526, 2807
XspI	CTAG	3 cut(s)	2319, 2903, 3321
ZrmI	AGTACT	1 cut(s)	1812
Zsp2I	ATGCAT	2 cut(s)	2927, 3073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.