Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003148

Physical Location & Seq

Genomic Coordinates Reverse (-)

4764227 .. 4769926

Gene Structure 5700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG066300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3192 bp

ATGGATGTGAACAACAGAAAAGTTCTGGTGCATCGATCGGAAGGTGAATTTGATTTTACCAAGTGGAGGGATTTGAAAGTTGGGGATATAGTGAAAGTGGAAAAGGACCAATTTTTTCCTGCCGATCTCATCTTACTTTCATCAAGCTATGATGAAGCACTTTGCTATGTAGAGACCACCAACCTTGATGGGGAAACTAATTTGAAAATAAAACAATCTCTGGAAGCAACTTCTAATCTTCATGAAGACTCGAGCTTCAAAGATTTCAAGGCTTTGATCAGATGTGAAGACCCGAATGCAAGTCTGTACTCATTCGTAGGGAGTCTGGAGTTTGAAGGGGAATCGTACCCTCTTTCACCTCAGCAGCTTCTGCTTAGGGACTCTAAGCTGAGAAACACTGATTTTATATATGGGGTTGTAATCTTCACAGGTCATGATACAAAAGTTATGCAAAACTCAACTGAACCACCTTCCAAGAGAAGCAAAATTGAGAAAAGGATGGATAAGATAGTCTACTTCTTGTTTTTCCTCTTAGTTGTGATGTCTTTTGTTGGTGCTATTGTCTTTGGGGTTACCACTAGCGAAGACATAGAAGATGGGCAATTGATAAGATGGTACCTTAGACCAGATGATACTACAGTTTACTATGATCCAACAAGAGCGCCACTTGCAGCCATTTTGCAGTTCTTAACAGCCGTTATGTTGTACAGTTATTTGATTCCCATTTCCTTGTATGTGTCGATAGAGATTGTCAAAGTGCTCCAGAGCATTTTCATCAACCAGGATCTGCACATGTACTACGAGGAAACTGACAAGCCAGCTCGAGCACGTACCTCAAACTTGAATGAAGAACTTGGCCAAGTTGATACTATTCTATCTGACAAAACAGGAACCTTAACTTGCAACTCAATGGAGTTTATCAAGTGTTCTATTGCCGGGACTGCTTTTGGACGCGGAGTTACAGAAGTTGAGAGAGCTTTGTCCAGTGGCAAGGGCTCATCTTTGTATGAAGGGGTGACAGAAGAAGAAGGCCAAGTTGAAGAATCTACTGAAGCCAAGACATCAATAAAAGGCTTTAACTTCATGGATGAAAGAATAATGGATGGCAATTGGGTTAAGGAGCCTCGTGCAGATGTAATCCAGAAGTTTCTACAGCTACTCGCCGTCTGTCATACAGCAATACCTGAAGTTGATGAAGAATCTGGAAGAGTTTCATACGAGGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCAAGAGAGCTTGGTTTTGAATTTTATGAAAGGGCTCAAACAACCATCTCCCTGCGCGAGTTTGATCCAATGTCTGGAAGGAGAGTTGAAAGATCTTATAAGATTTTGAATGTATTGGAGTTTAGTAGCTCAAGGAAGCGAATGTCTGTGATTGTAAGAAATGAGGAGGGAAAGATACTATTGCTCAGTAAAGGTGCTGACAGTGTCATGTTCCAAAGACTTGCAAGGGATGGAAGGGAGTTTGAAGAGAAGACCCGGGAGCACATTAATGAGTATGCTGATGCTGGTTTGAGGACTTTAGTACTTGCATATCGGGAACTTGATGAGGAAGAGTATTTTGAATTTAACAAAGAATATACTGAGGCCAAGAACTTGGTTAGTTCAGATCGAGAGGAAGCTGTCGAGGAAGTGGCTGAGAAGATAGAGAGGAACTTGATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGACTGCATTGACAAGCTTGCTCAGGCTGGAATTAAACTATGGGTTTTGACTGGAGATAAAATGGAGACAGCAATTAATATTGGATATGCCTGCAGTTTGCTTCGACAAGGAATGAAACAAATAATCATAAGCTCAGAGACCCCAGAAGCTAAAGCGCTAGAGAAGGTGGAGGACAAGTCCAAAGTTGCCATGGCATTGAAAGAAAGTGTTCTCCATCAAATAAGTGAGGCAAGGGCATTTCTTGCTTCAACAGATCAGAACTCCGAAGCATTGGCTTTGATCATTGATGGGAATTCACTCGCTTATGCCTTGGAGGTAGATGTCCAGGACCTCTTTCTAGAGCTTGCCATTGGCTGTGCATCTGTTATATGCTGTCGTTCATCTCCCAAACAGAAAGCACTTGTCACAAGACTGGTAAAAGTTAAAACTGGTAAAACAACTCTGGCAATTGGTGATGGGGCAAATGATGTAGGAATGCTTCAAGAAGCAGATATTGGTGTTGGTATCAGCGGTGTTGAAGGAATGCAGGCAGTCATGTCAAGTGACATTGCAATTGCACAGTTTCGTTTTCTGGAGCGCCTGCTACTCGTACATGGACATTGGTGTTACAGAAGAATCTCGTCAATGATATGCTATTTCTTTTACAAGAACATTACTTTTGGCTTCACTATCTTTTTCTATGAGATGTACGCTTCATTCTCGGGTCAATCTGCATATAATGATTGGTATCTATCACTCTATAACGTCTTCTTCACATCACTTCCTGTAATTGCATTGGGAGTGTTTGACCAAGATGTCTCAGCCAGATTCTGCCTCAAGTTCCCACTCTTGTACCAAGAAGGTGCACAAAATGTCTTATTTAGCTGGGTCCGGATACTTGGATGGTCGGTGAACGGCATAGTGTCTGCTATGATAATCTTCTTCTGCTGCATCCTGGCAATAGGTAGTCAAGCCTTCCGCAAAGGCGGGGAAGTTGTTGGCTTCGAAATCTTTGGTGCCACAATGTACTCAATTGTGGTATGGGTTGTCAACTGTCAGATGGCACTATCCATCAGTTACTTCACTTACATACAACATCTCTTCATCTGGGGTGGCATTGTGTTCTGGTACATATTCCAGCTGGCATATGGAGCCTTGGACCCTTCCATATCAACCACTGCCTATAAGGTCTTCATTGAAGCCTGTGCACCAGCCCCATTTTATTGGCTTCTCACACTCTTGGTTGTAGTCACTTCTCTCCTACCTTATTTCACTTACGCCGCCTTCCAAATGCGGTTCTTCCCCATGTATCATCAGATGATACAATGGATGAGAACAGATGGGCAATCAGATGACCCTGAGTTCTGTCATATGGTGAGGCAGAGATCGTTAAGACCCACAACAGTTGGCTACACAGCTCGCATTGCGACGTCTAAACGCTTTGAAGAGAAGCCCGAGAGTAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

1063

Amino Acids

120.29

Weight (kDa)

4.99

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	381 - 577	5.1e-21	P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C	PF16212	759 - 1009	4.7e-87	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13210 AT1G26130 AT1G26130 AT1G26130 AT1G26130 AT1G68710 AT1G68710 AT1G68710 AT3G25610
fragaria_vesca	FvH4_4g28450 FvH4_5g12920 FvH4_5g12920
malus_domestica	MD06G1209100.v1.1 MD13G1050400.v1.1 MD14G1219500.v1.1 MD16G1051100.v1.1
prunus_persica	Prupe.1G301500_v2.0.a1 Prupe.5G214200_v2.0.a1
pyrus_communis	pycom06g18670 pycom14g18190 pycom16g04490
rosa_chinensis	RchiOBHm_Chr4g0436411 RchiOBHm_Chr7g0184301
rosa_laevigata	RLG00000004988 RLG00000006521
rosa_multiflora	Rmu_sc0000579.1_g000001 Rmu_sc0013812.1_g000007
rosa_roxburghii	Rroxscaffold_3G00269750 Rroxscaffold_5G00377570
rosa_rugosa	Rorug04G0293600
rosa_samantha	Rh4AG348000 Rh4CG371300 Rh7AG081300 Rh7CG066300 Rh7DG065900
rosa_wichuraiana	Rw4G030420 Rw7G005410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1356
AasI	GACNNNNNNGTC	1 cut(s)	2537
AatII	GACGTC	1 cut(s)	3155
Acc65I	GGTACC	1 cut(s)	615
AccB1I	GGYRCC	2 cut(s)	615, 2738
AccB7I	CCANNNNNTGG	1 cut(s)	1331
AccI	GTMKAC	1 cut(s)	513
AccII	CGCG	2 cut(s)	954, 1314
AccIII	TCCGGA	1 cut(s)	2613
AciI	CCGC	6 cut(s)	954, 2253, 2701, 2709, 3003, 3016
AclWI	GGATC	3 cut(s)	644, 792, 1316
AcoI	YGGCCR	1 cut(s)	856
AcsI	RAATTY	4 cut(s)	47, 1277, 1598, 2035
AcuI	CTGAAG	2 cut(s)	1071, 1206
AcyI	GRCGYC	1 cut(s)	3152
AfeI	AGCGCT	1 cut(s)	1899
AfiI	CCNNNNNNNGG	3 cut(s)	66, 190, 1331
AflIII	ACRYGT	1 cut(s)	792
AjnI	CCWGG	3 cut(s)	780, 2067, 2676
AjuI	GAANNNNNNNTTGG	2 cut(s)	2220, 2252
Alw21I	GWGCWC	5 cut(s)	762, 829, 1521, 2590, 2932
Alw26I	GTCTC	4 cut(s)	167, 1802, 1874, 2545
Alw44I	GTGCAC	2 cut(s)	2586, 2928
AlwI	GGATC	3 cut(s)	644, 792, 1316
AlwNI	CAGNNNCTG	3 cut(s)	370, 787, 2553
Ama87I	CYCGRG	5 cut(s)	250, 822, 1512, 2443, 3176
Aor13HI	TCCGGA	1 cut(s)	2613
Aor51HI	AGCGCT	1 cut(s)	1899
AoxI	GGCC	3 cut(s)	856, 1030, 1620
ApaLI	GTGCAC	2 cut(s)	2586, 2928
ApeKI	GCWGC	5 cut(s)	364, 671, 1241, 1256, 2670
ApoI	RAATTY	4 cut(s)	47, 1277, 1598, 2035
AseI	ATTAAT	2 cut(s)	1524, 1818
Asp700I	GAANNNNTTC	2 cut(s)	1210, 1950
Asp718I	GGTACC	1 cut(s)	615
AspLEI	GCGC	4 cut(s)	664, 1314, 1900, 2322
AspS9I	GGNCC	4 cut(s)	106, 2071, 2611, 2881
AsuC2I	CCSGG	3 cut(s)	937, 1513, 1514
AsuHPI	GGTGA	7 cut(s)	56, 348, 1027, 1221, 2207, 2644, 3109
AsuII	TTCGAA	1 cut(s)	2727
AvaI	CYCGRG	5 cut(s)	250, 822, 1512, 2443, 3176
AvaII	GGWCC	4 cut(s)	106, 2071, 2611, 2881
BaeGI	GKGCMC	2 cut(s)	2590, 2932
BaeI	ACNNNNGTAYC	6 cut(s)	429, 462, 624, 657, 2558, 2591
BalI	TGGCCA	1 cut(s)	858
BanI	GGYRCC	2 cut(s)	615, 2738
BanII	GRGCYC	2 cut(s)	998, 1294
BarI	GAAGNNNNNNTAC	2 cut(s)	2205, 2237
BauI	CACGAG	1 cut(s)	1125
BbsI	GAAGAC	7 cut(s)	252, 294, 591, 1514, 1725, 2482, 2905
Bbv12I	GWGCWC	5 cut(s)	762, 829, 1521, 2590, 2932
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	5 cut(s)	376, 683, 1253, 1268, 2657
BceAI	ACGGC	3 cut(s)	680, 1148, 2653
BciT130I	CCWGG	3 cut(s)	782, 2069, 2678
BciVI	GTATCC	1 cut(s)	2610
BclI	TGATCA	2 cut(s)	276, 2022
BcnI	CCSGG	3 cut(s)	937, 1513, 1514
BcoDI	GTCTC	4 cut(s)	167, 1802, 1874, 2545
BfaI	CTAG	3 cut(s)	579, 1901, 2081
BfmI	CTRYAG	4 cut(s)	636, 1151, 1710, 1834
BfoI	RGCGCY	3 cut(s)	665, 1901, 2323
BfuI	GTATCC	1 cut(s)	2610
BglII	AGATCT	1 cut(s)	1349
BisI	GCNGC	6 cut(s)	365, 672, 1242, 1257, 2671, 3003
BlsI	GCNGC	6 cut(s)	366, 673, 1243, 1258, 2672, 3004
BmcAI	AGTACT	1 cut(s)	1560
Bme1390I	CCNGG	6 cut(s)	782, 937, 1513, 1514, 2069, 2678
Bme18I	GGWCC	4 cut(s)	106, 2071, 2611, 2881
BmeT110I	CYCGRG	5 cut(s)	250, 822, 1512, 2443, 3176
BmgT120I	GGNCC	4 cut(s)	106, 2071, 2611, 2881
BmiI	GGNNCC	8 cut(s)	617, 892, 1122, 1740, 2612, 2740, 2875, 2883
BmrFI	CCNGG	6 cut(s)	782, 937, 1513, 1514, 2069, 2678
BmsI	GCATC	4 cut(s)	40, 1528, 2111, 2682
BpiI	GAAGAC	7 cut(s)	252, 294, 591, 1514, 1725, 2482, 2905
BpmI	CTGGAG	4 cut(s)	347, 746, 1815, 2336
Bpu10I	CCTNAGC	3 cut(s)	360, 374, 1764
Bpu14I	TTCGAA	1 cut(s)	2727
BpuEI	CTTGAG	2 cut(s)	1372, 2543
BpuMI	CCSGG	3 cut(s)	937, 1513, 1514
Bsa29I	ATCGAT	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	830
BsaBI	GATNNNNATC	1 cut(s)	2469
BsaHI	GRCGYC	1 cut(s)	3152
BsaI	GGTCTC	2 cut(s)	167, 1874
BsaJI	CCNNGG	4 cut(s)	1512, 1932, 2052, 2877
BsaWI	WCCGGW	1 cut(s)	2613
BsaXI	ACNNNNNCTCC	2 cut(s)	1904, 1934
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 190, 1331
Bse1I	ACTGG	4 cut(s)	984, 1798, 2160, 2176
Bse3DI	GCAATG	2 cut(s)	2289, 3144
Bse8I	GATNNNNATC	1 cut(s)	2469
BseAI	TCCGGA	1 cut(s)	2613
BseBI	CCWGG	3 cut(s)	782, 2069, 2678
BseCI	ATCGAT	1 cut(s)	34
BseDI	CCNNGG	4 cut(s)	1512, 1932, 2052, 2877
BseGI	GGATG	8 cut(s)	10, 504, 1093, 1108, 1492, 2630, 2673, 3057
BseJI	GATNNNNATC	1 cut(s)	2469
BseLI	CCNNNNNNNGG	3 cut(s)	66, 190, 1331
BseMI	GCAATG	2 cut(s)	2289, 3144
BseMII	CTCAG	9 cut(s)	374, 380, 1456, 1608, 1662, 1778, 1890, 2556, 3072
BseNI	ACTGG	4 cut(s)	984, 1798, 2160, 2176
BseRI	GAGGAG	1 cut(s)	1436
BseSI	GKGCMC	2 cut(s)	2590, 2932
BseXI	GCAGC	5 cut(s)	376, 683, 1253, 1268, 2657
BseYI	CCCAGC	1 cut(s)	2607
BsgI	GTGCAG	2 cut(s)	773, 1149
Bsh1236I	CGCG	2 cut(s)	954, 1314
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	858, 1032, 1622
BshNI	GGYRCC	2 cut(s)	615, 2738
BshVI	ATCGAT	1 cut(s)	34
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	5 cut(s)	762, 829, 1521, 2590, 2932
BsiHKCI	CYCGRG	5 cut(s)	250, 822, 1512, 2443, 3176
BsiSI	CCGG	3 cut(s)	936, 1513, 2614
BslFI	GGGAC	2 cut(s)	392, 952
BslI	CCNNNNNNNGG	3 cut(s)	66, 190, 1331
BsmAI	GTCTC	4 cut(s)	167, 1802, 1874, 2545
BsmFI	GGGAC	2 cut(s)	392, 952
BsmI	GAATGC	3 cut(s)	301, 2223, 2271
BsnI	GGCC	3 cut(s)	858, 1032, 1622
Bso31I	GGTCTC	2 cut(s)	167, 1874
BsoBI	CYCGRG	5 cut(s)	250, 822, 1512, 2443, 3176
Bsp119I	TTCGAA	1 cut(s)	2727
Bsp1286I	GDGCHC	7 cut(s)	762, 829, 998, 1294, 1521, 2590, 2932
Bsp13I	TCCGGA	1 cut(s)	2613
Bsp1407I	TGTACA	1 cut(s)	705
Bsp19I	CCATGG	1 cut(s)	1932
BspACI	CCGC	6 cut(s)	954, 2253, 2701, 2709, 3003, 3016
BspANI	GGCC	3 cut(s)	858, 1032, 1622
BspCNI	CTCAG	9 cut(s)	373, 381, 1455, 1609, 1663, 1777, 1889, 2555, 3073
BspDI	ATCGAT	1 cut(s)	34
BspEI	TCCGGA	1 cut(s)	2613
BspFNI	CGCG	2 cut(s)	954, 1314
BspHI	TCATGA	2 cut(s)	241, 433
BspLI	GGNNCC	8 cut(s)	617, 892, 1122, 1740, 2612, 2740, 2875, 2883
BspMAI	CTGCAG	2 cut(s)	1714, 1838
BspPI	GGATC	3 cut(s)	644, 792, 1316
BspT104I	TTCGAA	1 cut(s)	2727
BspT107I	GGYRCC	2 cut(s)	615, 2738
BspTNI	GGTCTC	2 cut(s)	167, 1874
BsrDI	GCAATG	2 cut(s)	2289, 3144
BsrGI	TGTACA	1 cut(s)	705
BsrI	ACTGG	4 cut(s)	984, 1798, 2160, 2176
BssECI	CCNNGG	4 cut(s)	1512, 1932, 2052, 2877
BssNI	GRCGYC	1 cut(s)	3152
BssSI	CACGAG	1 cut(s)	1125
BssT1I	CCWWGG	3 cut(s)	1932, 2052, 2877
Bst2BI	CACGAG	1 cut(s)	1125
Bst2UI	CCWGG	3 cut(s)	782, 2069, 2678
Bst4CI	ACNGT	6 cut(s)	640, 710, 1460, 2304, 2777, 3127
Bst6I	CTCTTC	5 cut(s)	1201, 1497, 1581, 2828, 3162
BstACI	GRCGYC	1 cut(s)	3152
BstAPI	GCANNNNNTGC	2 cut(s)	370, 1985
BstAUI	TGTACA	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	830
BstBI	TTCGAA	1 cut(s)	2727
BstC8I	GCNNGC	8 cut(s)	819, 1761, 1834, 2088, 2271, 2324, 2865, 3142
BstDSI	CCRYGG	1 cut(s)	1932
BstEII	GGTNACC	1 cut(s)	571
BstF5I	GGATG	8 cut(s)	10, 504, 1093, 1108, 1492, 2630, 2673, 3057
BstFNI	CGCG	2 cut(s)	954, 1314
BstH2I	RGCGCY	3 cut(s)	665, 1901, 2323
BstHHI	GCGC	4 cut(s)	664, 1314, 1900, 2322
BstMAI	GTCTC	4 cut(s)	167, 1802, 1874, 2545
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	6 cut(s)	370, 668, 941, 1985, 2873, 3146
BstNI	CCWGG	3 cut(s)	782, 2069, 2678
BstNSI	RCATGY	1 cut(s)	796
BstPI	GGTNACC	1 cut(s)	571
BstSCI	CCNGG	6 cut(s)	780, 935, 1511, 1512, 2067, 2676
BstSFI	CTRYAG	4 cut(s)	636, 1151, 1710, 1834
BstSLI	GKGCMC	2 cut(s)	2590, 2932
BstUI	CGCG	2 cut(s)	954, 1314
BstV1I	GCAGC	5 cut(s)	376, 683, 1253, 1268, 2657
BstV2I	GAAGAC	7 cut(s)	252, 294, 591, 1514, 1725, 2482, 2905
BstX2I	RGATCY	2 cut(s)	784, 1349
BstXI	CCANNNNNNTGG	2 cut(s)	1630, 2946
BstYI	RGATCY	2 cut(s)	784, 1349
Bsu15I	ATCGAT	1 cut(s)	34
BsuI	GTATCC	1 cut(s)	2610
BsuRI	GGCC	3 cut(s)	858, 1032, 1622
BsuTUI	ATCGAT	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	1932
BtsCI	GGATG	8 cut(s)	10, 504, 1093, 1108, 1492, 2630, 2673, 3057
BtsI	GCAGTG	1 cut(s)	2898
BtsIMutI	CAGTG	4 cut(s)	396, 991, 1465, 2898
Cac8I	GCNNGC	8 cut(s)	819, 1761, 1834, 2088, 2271, 2324, 2865, 3142
CaiI	CAGNNNCTG	3 cut(s)	370, 787, 2553
CciI	TCATGA	2 cut(s)	241, 433
CfoI	GCGC	4 cut(s)	664, 1314, 1900, 2322
Cfr13I	GGNCC	4 cut(s)	106, 2071, 2611, 2881
Cfr9I	CCCGGG	1 cut(s)	1512
ClaI	ATCGAT	1 cut(s)	34
CseI	GACGC	1 cut(s)	960
CspCI	CAANNNNNGTGG	4 cut(s)	166, 201, 3109, 3144
CviAII	CATG	9 cut(s)	242, 434, 793, 1084, 1465, 1933, 2278, 2336, 3028
DrdI	GACNNNNNNGTC	1 cut(s)	2537
DseDI	GACNNNNNNGTC	1 cut(s)	2537
EaeI	YGGCCR	1 cut(s)	856
Eam1104I	CTCTTC	5 cut(s)	1201, 1497, 1581, 2828, 3162
EarI	CTCTTC	5 cut(s)	1201, 1497, 1581, 2828, 3162
Eco130I	CCWWGG	3 cut(s)	1932, 2052, 2877
Eco24I	GRGCYC	2 cut(s)	998, 1294
Eco31I	GGTCTC	2 cut(s)	167, 1874
Eco47I	GGWCC	4 cut(s)	106, 2071, 2611, 2881
Eco47III	AGCGCT	1 cut(s)	1899
Eco57I	CTGAAG	2 cut(s)	1071, 1206
Eco88I	CYCGRG	5 cut(s)	250, 822, 1512, 2443, 3176
Eco91I	GGTNACC	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	2071
EcoO65I	GGTNACC	1 cut(s)	571
EcoRI	GAATTC	1 cut(s)	2035
EcoRII	CCWGG	3 cut(s)	780, 2067, 2676
EcoT14I	CCWWGG	3 cut(s)	1932, 2052, 2877
EcoT38I	GRGCYC	2 cut(s)	998, 1294
ErhI	CCWWGG	3 cut(s)	1932, 2052, 2877
FaeI	CATG	9 cut(s)	245, 437, 796, 1087, 1468, 1936, 2281, 2339, 3031
FalI	AAGNNNNNCTT	2 cut(s)	1710, 1742
FaqI	GGGAC	2 cut(s)	392, 952
FatI	CATG	9 cut(s)	241, 433, 792, 1083, 1464, 1932, 2277, 2335, 3027
FauI	CCCGC	1 cut(s)	2702
FauNDI	CATATG	2 cut(s)	2869, 3093
FbaI	TGATCA	2 cut(s)	276, 2022
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	6 cut(s)	365, 672, 1242, 1257, 2671, 3003
FokI	GGATG	8 cut(s)	17, 511, 1100, 1115, 1499, 2637, 2660, 3064
FriOI	GRGCYC	2 cut(s)	998, 1294
Fsp4HI	GCNGC	6 cut(s)	365, 672, 1242, 1257, 2671, 3003
FspBI	CTAG	3 cut(s)	579, 1901, 2081
GlaI	GCGC	4 cut(s)	663, 1313, 1899, 2321
GluI	GCNGC	6 cut(s)	365, 672, 1242, 1257, 2671, 3003
GsaI	CCCAGC	1 cut(s)	2611
GsuI	CTGGAG	4 cut(s)	347, 746, 1815, 2336
HaeII	RGCGCY	3 cut(s)	665, 1901, 2323
HaeIII	GGCC	3 cut(s)	858, 1032, 1622
HapII	CCGG	3 cut(s)	936, 1513, 2614
HgaI	GACGC	1 cut(s)	960
HhaI	GCGC	4 cut(s)	664, 1314, 1900, 2322
Hin1I	GRCGYC	1 cut(s)	3152
Hin1II	CATG	9 cut(s)	245, 437, 796, 1087, 1468, 1936, 2281, 2339, 3031
Hin6I	GCGC	4 cut(s)	662, 1312, 1898, 2320
HinP1I	GCGC	4 cut(s)	662, 1312, 1898, 2320
HincII	GTYRAC	1 cut(s)	2773
HindII	GTYRAC	1 cut(s)	2773
HindIII	AAGCTT	1 cut(s)	1757
HpaII	CCGG	3 cut(s)	936, 1513, 2614
HphI	GGTGA	7 cut(s)	56, 348, 1027, 1221, 2207, 2644, 3109
Hpy166II	GTNNAC	7 cut(s)	10, 514, 643, 2588, 2635, 2773, 2930
Hpy8I	GTNNAC	7 cut(s)	10, 514, 643, 2588, 2635, 2773, 2930
Hpy99I	CGWCG	1 cut(s)	3154
HpyCH4III	ACNGT	6 cut(s)	640, 710, 1460, 2304, 2777, 3127
HpyCH4IV	ACGT	3 cut(s)	829, 2487, 3152
HpyF10VI	GCNNNNNNNGC	6 cut(s)	370, 668, 941, 1985, 2873, 3146
HpySE526I	ACGT	3 cut(s)	829, 2487, 3152
Hsp92I	GRCGYC	1 cut(s)	3152
Hsp92II	CATG	9 cut(s)	245, 437, 796, 1087, 1468, 1936, 2281, 2339, 3031
HspAI	GCGC	4 cut(s)	662, 1312, 1898, 2320
Kpn2I	TCCGGA	1 cut(s)	2613
KpnI	GGTACC	1 cut(s)	619
Ksp22I	TGATCA	2 cut(s)	276, 2022
LmnI	GCTCC	5 cut(s)	765, 1120, 1516, 2317, 2873
Lsp1109I	GCAGC	5 cut(s)	376, 683, 1253, 1268, 2657
LweI	GCATC	4 cut(s)	40, 1528, 2111, 2682
MaeI	CTAG	3 cut(s)	579, 1901, 2081
MaeII	ACGT	3 cut(s)	829, 2487, 3152
MaeIII	GTNAC	8 cut(s)	571, 958, 1015, 2146, 2285, 2348, 2798, 2971
MfeI	CAATTG	5 cut(s)	602, 1108, 2190, 2295, 2754
MflI	RGATCY	2 cut(s)	784, 1349
MhlI	GDGCHC	7 cut(s)	762, 829, 998, 1294, 1521, 2590, 2932
MlsI	TGGCCA	1 cut(s)	858
MluNI	TGGCCA	1 cut(s)	858
MlyI	GAGTC	3 cut(s)	242, 331, 374
MmeI	TCCRAC	1 cut(s)	677
Mox20I	TGGCCA	1 cut(s)	858
MroI	TCCGGA	1 cut(s)	2613
MroXI	GAANNNNTTC	2 cut(s)	1210, 1950
MscI	TGGCCA	1 cut(s)	858
MslI	CAYNNNNRTG	1 cut(s)	1524
Msp20I	TGGCCA	1 cut(s)	858
MspA1I	CMGCKG	2 cut(s)	2253, 2863
MspI	CCGG	3 cut(s)	936, 1513, 2614
MspR9I	CCNGG	6 cut(s)	782, 937, 1513, 1514, 2069, 2678
MunI	CAATTG	5 cut(s)	602, 1108, 2190, 2295, 2754
Mva1269I	GAATGC	3 cut(s)	301, 2223, 2271
MvaI	CCWGG	3 cut(s)	782, 2069, 2678
MvnI	CGCG	2 cut(s)	954, 1314
MwoI	GCNNNNNNNGC	6 cut(s)	370, 668, 941, 1985, 2873, 3146
NciI	CCSGG	3 cut(s)	937, 1513, 1514
NcoI	CCATGG	1 cut(s)	1932
NdeI	CATATG	2 cut(s)	2869, 3093
NlaIII	CATG	9 cut(s)	245, 437, 796, 1087, 1468, 1936, 2281, 2339, 3031
NlaIV	GGNNCC	8 cut(s)	617, 892, 1122, 1740, 2612, 2740, 2875, 2883
NmuCI	GTSAC	4 cut(s)	1015, 2146, 2285, 2971
NspI	RCATGY	1 cut(s)	796
NspV	TTCGAA	1 cut(s)	2727
PaeR7I	CTCGAG	2 cut(s)	250, 822
PagI	TCATGA	2 cut(s)	241, 433
PciI	ACATGT	1 cut(s)	792
PctI	GAATGC	3 cut(s)	301, 2223, 2271
PdmI	GAANNNNTTC	2 cut(s)	1210, 1950
PfeI	GAWTC	8 cut(s)	341, 718, 1043, 1199, 1226, 1693, 2358, 2550
PflFI	GACNNNGTC	1 cut(s)	1460
PflMI	CCANNNNNTGG	1 cut(s)	1331
PfoI	TCCNGGA	1 cut(s)	2067
PkrI	GCNGC	6 cut(s)	366, 673, 1243, 1258, 2672, 3004
Ple19I	CGATCG	1 cut(s)	38
PleI	GAGTC	3 cut(s)	242, 330, 374
PpsI	GAGTC	3 cut(s)	242, 330, 374
Ppu21I	YACGTR	1 cut(s)	830
PpuMI	RGGWCCY	1 cut(s)	2071
PscI	ACATGT	1 cut(s)	792
PshBI	ATTAAT	2 cut(s)	1524, 1818
PsiI	TTATAA	1 cut(s)	1356
Psp5II	RGGWCCY	1 cut(s)	2071
Psp6I	CCWGG	3 cut(s)	780, 2067, 2676
PspEI	GGTNACC	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	2607
PspGI	CCWGG	3 cut(s)	780, 2067, 2676
PspN4I	GGNNCC	8 cut(s)	617, 892, 1122, 1740, 2612, 2740, 2875, 2883
PspPI	GGNCC	4 cut(s)	106, 2071, 2611, 2881
PspPPI	RGGWCCY	1 cut(s)	2071
PspXI	VCTCGAGB	2 cut(s)	250, 822
PstI	CTGCAG	2 cut(s)	1714, 1838
PstNI	CAGNNNCTG	3 cut(s)	370, 787, 2553
PsuI	RGATCY	2 cut(s)	784, 1349
PsyI	GACNNNGTC	1 cut(s)	1460
PvuI	CGATCG	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	2863
RseI	CAYNNNNRTG	1 cut(s)	1524
SatI	GCNGC	6 cut(s)	365, 672, 1242, 1257, 2671, 3003
Sau96I	GGNCC	4 cut(s)	106, 2071, 2611, 2881
ScaI	AGTACT	1 cut(s)	1560
SchI	GAGTC	3 cut(s)	242, 331, 374
ScrFI	CCNGG	6 cut(s)	782, 937, 1513, 1514, 2069, 2678
SduI	GDGCHC	7 cut(s)	762, 829, 998, 1294, 1521, 2590, 2932
SfaNI	GCATC	4 cut(s)	40, 1528, 2111, 2682
SfcI	CTRYAG	4 cut(s)	636, 1151, 1710, 1834
Sfr274I	CTCGAG	2 cut(s)	250, 822
SfuI	TTCGAA	1 cut(s)	2727
SinI	GGWCC	4 cut(s)	106, 2071, 2611, 2881
SlaI	CTCGAG	2 cut(s)	250, 822
SmaI	CCCGGG	1 cut(s)	1514
SmiMI	CAYNNNNRTG	1 cut(s)	1524
SmlI	CTYRAG	4 cut(s)	250, 822, 1387, 2558
SmoI	CTYRAG	4 cut(s)	250, 822, 1387, 2558
SsiI	CCGC	6 cut(s)	954, 2253, 2701, 2709, 3003, 3016
SspI	AATATT	1 cut(s)	1822
SspMI	CTAG	3 cut(s)	579, 1901, 2081
StyD4I	CCNGG	6 cut(s)	780, 935, 1511, 1512, 2067, 2676
StyI	CCWWGG	3 cut(s)	1932, 2052, 2877
TaaI	ACNGT	6 cut(s)	640, 710, 1460, 2304, 2777, 3127
TaiI	ACGT	3 cut(s)	832, 2490, 3155
TaqI	TCGA	8 cut(s)	34, 251, 740, 823, 1645, 1659, 1846, 2727
TatI	WGTACW	5 cut(s)	306, 705, 795, 1558, 2748
TauI	GCSGC	1 cut(s)	3005
TfiI	GAWTC	8 cut(s)	341, 718, 1043, 1199, 1226, 1693, 2358, 2550
TscAI	CASTG	4 cut(s)	403, 991, 1465, 2905
TseFI	GTSAC	4 cut(s)	1015, 2146, 2285, 2971
TseI	GCWGC	5 cut(s)	364, 671, 1241, 1256, 2670
Tsp45I	GTSAC	4 cut(s)	1015, 2146, 2285, 2971
TspMI	CCCGGG	1 cut(s)	1512
TspRI	CASTG	4 cut(s)	403, 991, 1465, 2905
Tth111I	GACNNNGTC	1 cut(s)	1460
Van91I	CCANNNNNTGG	1 cut(s)	1331
VneI	GTGCAC	2 cut(s)	2586, 2928
VpaK11BI	GGWCC	4 cut(s)	106, 2071, 2611, 2881
VspI	ATTAAT	2 cut(s)	1524, 1818
XapI	RAATTY	4 cut(s)	47, 1277, 1598, 2035
XbaI	TCTAGA	1 cut(s)	2080
XceI	RCATGY	1 cut(s)	796
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1930, 2867
XhoI	CTCGAG	2 cut(s)	250, 822
XmaI	CCCGGG	1 cut(s)	1512
XmiI	GTMKAC	1 cut(s)	513
XmnI	GAANNNNTTC	2 cut(s)	1210, 1950
XspI	CTAG	3 cut(s)	579, 1901, 2081
ZraI	GACGTC	1 cut(s)	3153
ZrmI	AGTACT	1 cut(s)	1560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.