RLG00000008557

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011623
Physical Location & Seq
Forward (+)
32004129 .. 32006251
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008557

Sequence Viewer

Length: 735 bp
ATGGCCAAGCTTCTCTGCACCTGCCTCCATCTTCGATGGAGTAAAATTCTGGCCCTTCCCATGGGGTCGCAACTATCGAGCACAGCTCAGTCCGTCCCTTTTGTCTCTTTGTTTCTCTTATTGACGTCGAGATCGGGGGTTCTTTCTCATTCTCTATTTGGGAGGTTCACGGATTCAACTGAGCCAGGATTGGATCAGGTTCGGCTAGAGTCCGTCCCCCACGGATGGCGGCGAGGGCGCTTTCAAAGGGACCAGGTTGTTGGGACGGCGCTGAGGTGGTTGGGCGAGGAACTTATGTTCACCTATTGTGATAGCGCAGATCTGCTGGCATGGGGCTTGTCGGGTTCAGGCTTGGCTAGTCAGAGCCCCTTCGATCTGAGAGGGAGTTGGGTATGGCAGTGCATCTCCACAATCCTGTTTCGAAACAGGATCAGGGCCATGGAGGGCAGCGCCGGTGAAAGTGTTTGGCGTCGTGGTGACGAGGGTGGGATCGGCCTTCTCCGGTGGATTTCGGGTGGGGATATCGGGAGGATCAACGCTATCATTTTCAAAAAGGAGGCTGGCTGTTCGGACAGGCGGCGGAGGGCTAGGCATAGTGCTGCCATCCATCAGGTTTGCTTGGAGTGGCCACTGCACAGTGTGGACCCTGATTTGATATGCTATTTTTTAATCGGGTTACGGAGCGAGTGTGAAGCATCTTGGATTATAGCCCAGATGACAGCGAAACAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.27

Weight (kDa)

9.06

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
AatII GACGTC 1 cut(s) 128
Acc36I ACCTGC 1 cut(s) 29
AciI CCGC 3 cut(s) 229, 577, 580
AclWI GGATC 4 cut(s) 201, 437, 497, 539
AcoI YGGCCR 2 cut(s) 3, 626
AcsI RAATTY 1 cut(s) 45
AcyI GRCGYC 2 cut(s) 125, 469
AdeI CACNNNGTG 1 cut(s) 640
AfiI CCNNNNNNNGG 2 cut(s) 61, 225
AgsI TTSAA 3 cut(s) 177, 245, 550
AjnI CCWGG 2 cut(s) 184, 252
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 2 cut(s) 10, 86
AluI AGCT 2 cut(s) 10, 86
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 4 cut(s) 201, 437, 497, 539
AoxI GGCC 5 cut(s) 3, 51, 435, 493, 626
ApeKI GCWGC 2 cut(s) 447, 599
ApoI RAATTY 1 cut(s) 45
AspLEI GCGC 4 cut(s) 240, 271, 317, 452
AspS9I GGNCC 4 cut(s) 52, 250, 435, 643
AsuHPI GGTGA 3 cut(s) 292, 467, 488
AsuII TTCGAA 1 cut(s) 421
AvaII GGWCC 2 cut(s) 250, 643
BalI TGGCCA 2 cut(s) 5, 628
BanII GRGCYC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 459, 586
BccI CCATC 5 cut(s) 30, 36, 219, 611, 615
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 2 cut(s) 186, 254
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 3 cut(s) 206, 357, 588
BfoI RGCGCY 3 cut(s) 241, 272, 453
BfuAI ACCTGC 1 cut(s) 29
BglII AGATCT 1 cut(s) 319
BisI GCNGC 4 cut(s) 230, 448, 578, 600
BlsI GCNGC 4 cut(s) 231, 449, 579, 601
Bme1390I CCNGG 2 cut(s) 186, 254
Bme18I GGWCC 2 cut(s) 250, 643
BmgT120I GGNCC 4 cut(s) 52, 250, 435, 643
BmiI GGNNCC 2 cut(s) 251, 645
BmrFI CCNGG 2 cut(s) 186, 254
BmsI GCATC 2 cut(s) 411, 704
BplI GAGNNNNNCTC 2 cut(s) 70, 102
Bpu10I CCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 421
BsaHI GRCGYC 2 cut(s) 125, 469
BsaJI CCNNGG 3 cut(s) 60, 220, 438
BsaWI WCCGGW 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 673, 703
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 225
Bse118I RCCGGY 1 cut(s) 452
BseBI CCWGG 2 cut(s) 186, 254
BseDI CCNNGG 3 cut(s) 60, 220, 438
BseGI GGATG 2 cut(s) 230, 603
BseLI CCNNNNNNNGG 2 cut(s) 61, 225
BseMII CTCAG 4 cut(s) 101, 171, 263, 368
BseXI GCAGC 2 cut(s) 459, 586
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 5 cut(s) 5, 53, 437, 495, 628
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 453, 502
BslFI GGGAC 4 cut(s) 80, 200, 263, 277
BslI CCNNNNNNNGG 2 cut(s) 61, 225
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 4 cut(s) 80, 200, 263, 277
BsnI GGCC 5 cut(s) 5, 53, 437, 495, 628
Bsp119I TTCGAA 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 83, 368
Bsp143I GATC 7 cut(s) 131, 193, 319, 373, 429, 489, 531
Bsp19I CCATGG 2 cut(s) 60, 438
BspACI CCGC 3 cut(s) 229, 577, 580
BspANI GGCC 5 cut(s) 5, 53, 437, 495, 628
BspCNI CTCAG 4 cut(s) 100, 172, 264, 369
BspLI GGNNCC 2 cut(s) 251, 645
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 4 cut(s) 201, 437, 497, 539
BspT104I TTCGAA 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 3 cut(s) 60, 220, 438
BssMI GATC 7 cut(s) 131, 193, 319, 373, 429, 489, 531
BssNI GRCGYC 2 cut(s) 125, 469
BssT1I CCWWGG 2 cut(s) 60, 438
Bst2UI CCWGG 2 cut(s) 186, 254
Bst4CI ACNGT 1 cut(s) 638
BstACI GRCGYC 2 cut(s) 125, 469
BstBI TTCGAA 1 cut(s) 421
BstC8I GCNNGC 2 cut(s) 327, 562
BstDEI CTNAG 4 cut(s) 87, 180, 272, 377
BstDSI CCRYGG 3 cut(s) 60, 220, 438
BstF5I GGATG 2 cut(s) 230, 603
BstH2I RGCGCY 3 cut(s) 241, 272, 453
BstHHI GCGC 4 cut(s) 240, 271, 317, 452
BstKTI GATC 7 cut(s) 134, 196, 322, 376, 432, 492, 534
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 7 cut(s) 131, 193, 319, 373, 429, 489, 531
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 2 cut(s) 186, 254
BstSCI CCNGG 2 cut(s) 184, 252
BstV1I GCAGC 2 cut(s) 459, 586
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 5 cut(s) 5, 53, 437, 495, 628
BtgI CCRYGG 3 cut(s) 60, 220, 438
BtsCI GGATG 2 cut(s) 230, 603
BtsI GCAGTG 2 cut(s) 404, 629
BtsIMutI CAGTG 3 cut(s) 404, 629, 643
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 327, 562
CfoI GCGC 4 cut(s) 240, 271, 317, 452
Cfr10I RCCGGY 1 cut(s) 452
Cfr13I GGNCC 4 cut(s) 52, 250, 435, 643
CseI GACGC 1 cut(s) 458
CsiI ACCWGGT 1 cut(s) 252
CviAII CATG 3 cut(s) 61, 330, 439
DdeI CTNAG 4 cut(s) 87, 180, 272, 377
DpnI GATC 7 cut(s) 133, 195, 321, 375, 431, 491, 533
DpnII GATC 7 cut(s) 131, 193, 319, 373, 429, 489, 531
DraIII CACNNNGTG 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 3, 626
EciI GGCGGA 1 cut(s) 595
Eco130I CCWWGG 2 cut(s) 60, 438
Eco24I GRGCYC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 250, 643
EcoRII CCWGG 2 cut(s) 184, 252
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 60, 438
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 2 cut(s) 60, 438
FaeI CATG 3 cut(s) 64, 333, 442
FaiI YATR 8 cut(s) 62, 296, 331, 394, 440, 594, 658, 707
FaqI GGGAC 4 cut(s) 80, 200, 263, 277
FatI CATG 3 cut(s) 60, 329, 438
Fnu4HI GCNGC 4 cut(s) 230, 448, 578, 600
FokI GGATG 2 cut(s) 237, 590
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 4 cut(s) 230, 448, 578, 600
FspBI CTAG 3 cut(s) 206, 357, 588
GlaI GCGC 4 cut(s) 239, 270, 316, 451
GluI GCNGC 4 cut(s) 230, 448, 578, 600
HaeII RGCGCY 3 cut(s) 241, 272, 453
HaeIII GGCC 5 cut(s) 5, 53, 437, 495, 628
HapII CCGG 2 cut(s) 453, 502
HgaI GACGC 1 cut(s) 458
HhaI GCGC 4 cut(s) 240, 271, 317, 452
Hin1I GRCGYC 2 cut(s) 125, 469
Hin1II CATG 3 cut(s) 64, 333, 442
Hin6I GCGC 4 cut(s) 238, 269, 315, 450
HinP1I GCGC 4 cut(s) 238, 269, 315, 450
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 173, 209
HpaII CCGG 2 cut(s) 453, 502
HphI GGTGA 3 cut(s) 292, 467, 488
Hpy166II GTNNAC 3 cut(s) 168, 300, 643
Hpy188I TCNGA 3 cut(s) 363, 378, 571
Hpy188III TCNNGA 2 cut(s) 129, 526
Hpy8I GTNNAC 3 cut(s) 168, 300, 643
Hpy99I CGWCG 2 cut(s) 130, 474
HpyAV CCTTC 3 cut(s) 65, 379, 506
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 18, 402, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 4 cut(s) 87, 180, 272, 377
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 2 cut(s) 125, 469
Hsp92II CATG 3 cut(s) 64, 333, 442
HspAI GCGC 4 cut(s) 238, 269, 315, 450
Kzo9I GATC 7 cut(s) 131, 193, 319, 373, 429, 489, 531
LmnI GCTCC 1 cut(s) 681
Lsp1109I GCAGC 2 cut(s) 459, 586
LweI GCATC 2 cut(s) 411, 704
MabI ACCWGGT 1 cut(s) 252
MaeI CTAG 3 cut(s) 206, 357, 588
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 476, 675
MalI GATC 7 cut(s) 133, 195, 321, 375, 431, 491, 533
MboI GATC 7 cut(s) 131, 193, 319, 373, 429, 489, 531
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 83, 368
MlsI TGGCCA 2 cut(s) 5, 628
MluCI AATT 1 cut(s) 45
MluNI TGGCCA 2 cut(s) 5, 628
MlyI GAGTC 1 cut(s) 218
Mox20I TGGCCA 2 cut(s) 5, 628
MscI TGGCCA 2 cut(s) 5, 628
MseI TTAA 2 cut(s) 668, 733
Msp20I TGGCCA 2 cut(s) 5, 628
MspI CCGG 2 cut(s) 453, 502
MspR9I CCNGG 2 cut(s) 186, 254
MvaI CCWGG 2 cut(s) 186, 254
MwoI GCNNNNNNNGC 1 cut(s) 235
NcoI CCATGG 2 cut(s) 60, 438
NdeII GATC 7 cut(s) 131, 193, 319, 373, 429, 489, 531
NlaIII CATG 3 cut(s) 64, 333, 442
NlaIV GGNNCC 2 cut(s) 251, 645
NmuCI GTSAC 1 cut(s) 476
NspV TTCGAA 1 cut(s) 421
PaqCI CACCTGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 4 cut(s) 231, 449, 579, 601
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 184, 252
PspGI CCWGG 2 cut(s) 184, 252
PspN4I GGNNCC 2 cut(s) 251, 645
PspPI GGNCC 4 cut(s) 52, 250, 435, 643
PsuI RGATCY 1 cut(s) 319
SaqAI TTAA 2 cut(s) 668, 733
SatI GCNGC 4 cut(s) 230, 448, 578, 600
Sau3AI GATC 7 cut(s) 131, 193, 319, 373, 429, 489, 531
Sau96I GGNCC 4 cut(s) 52, 250, 435, 643
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 186, 254
SduI GDGCHC 2 cut(s) 83, 368
SexAI ACCWGGT 1 cut(s) 252
SfaNI GCATC 2 cut(s) 411, 704
SfuI TTCGAA 1 cut(s) 421
SgrAI CRCCGGYG 1 cut(s) 452
SinI GGWCC 2 cut(s) 250, 643
Sse9I AATT 1 cut(s) 45
SsiI CCGC 3 cut(s) 229, 577, 580
SspMI CTAG 3 cut(s) 206, 357, 588
StyD4I CCNGG 2 cut(s) 184, 252
StyI CCWWGG 2 cut(s) 60, 438
TaaI ACNGT 1 cut(s) 638
TaiI ACGT 1 cut(s) 128
TaqI TCGA 5 cut(s) 34, 77, 128, 372, 421
TasI AATT 1 cut(s) 45
TauI GCSGC 2 cut(s) 232, 580
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 668, 733
Tru9I TTAA 2 cut(s) 668, 733
TscAI CASTG 3 cut(s) 404, 636, 643
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 2 cut(s) 447, 599
Tsp45I GTSAC 1 cut(s) 476
TspGWI ACGGA 5 cut(s) 82, 185, 202, 237, 694
TspRI CASTG 3 cut(s) 404, 636, 643
VpaK11BI GGWCC 2 cut(s) 250, 643
XapI RAATTY 1 cut(s) 45
XspI CTAG 3 cut(s) 206, 357, 588
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.