Rroxscaffold_3G00252120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011623
Physical Location & Seq
Reverse (-)
46154169 .. 46166257
12089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252120.1

Sequence Viewer

Length: 657 bp
ATGGATGATACTACGCATGGGATAAAGAAATTACTTATTTTTCATGGCGTGGATCATGAGAAGAGTATTTTAACACCAGAAAAAGATTTAGGCACCCGAAAAGCTCGAGCACCCAATCACCATCTTCGCCGCTCTCTTGCATCGAAACACTTCCTCCCAAGTACGAAAACACATGCAAGGAGATCTTCAAAGGCTGGAATTGCATTTCCGGCAACAAATCCAACGACCGCAAACTCGTCAAGTGGAGGTGGAAGCCTAAGCACCGTGATTTGGCGAATCTCCGGCCCTAACGGCGAGGGGCCGGGGTTGTGCGGTTGGAGGCGGCTCGGGGGTGCTATGGTTATGGCGGTGCGGTCGGGCTCTGCTTGGACAAACCCGATTTGGGACCTTACATGTGAAGGTTCCATTGGCAACCTCAGAAAAACGATGAGAGGGAACACTACTGGCAACACTCACGTACTGATGATCAGACTATGGAGGAAAGCTAGAGGTGAGGAAATTCCAAGAGATTGGTCAAGTCTGTTAAATCTTCACATTGTGATTCCTCTTTACAAATTAAGCTCATTTCAAAATGGCTTGGCCTTTTTCTACCTGAAACTACATGCTCCTAAAACAGAAGAACGTACCTCTAGGGAGTGGAACACTCAAAAACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.21

Weight (kDa)

10.68

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 132
AciI CCGC 6 cut(s) 130, 228, 312, 322, 347, 352
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 498
AdeI CACNNNGTG 1 cut(s) 538
AfaI GTAC 3 cut(s) 163, 459, 625
AfiI CCNNNNNNNGG 2 cut(s) 270, 382
AflIII ACRYGT 1 cut(s) 392
AgsI TTSAA 2 cut(s) 189, 569
AjuI GAANNNNNNNTTGG 2 cut(s) 390, 422
AluBI AGCT 3 cut(s) 104, 485, 561
AluI AGCT 3 cut(s) 104, 485, 561
Alw21I GWGCWC 1 cut(s) 112
AlwI GGATC 1 cut(s) 60
Ama87I CYCGRG 2 cut(s) 105, 326
AoxI GGCC 3 cut(s) 283, 299, 579
ApoI RAATTY 1 cut(s) 498
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 3 cut(s) 284, 299, 385
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 110, 503
AvaI CYCGRG 2 cut(s) 105, 326
AvaII GGWCC 1 cut(s) 385
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 112
BccI CCATC 1 cut(s) 129
BceAI ACGGC 1 cut(s) 307
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 1 cut(s) 303
BfaI CTAG 2 cut(s) 486, 630
BfmI CTRYAG 1 cut(s) 653
BglI GCCNNNNNGGC 1 cut(s) 291
BglII AGATCT 1 cut(s) 182
BisI GCNGC 2 cut(s) 130, 323
BlsI GCNGC 2 cut(s) 131, 324
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 2 cut(s) 105, 326
BmgT120I GGNCC 3 cut(s) 284, 299, 385
BmiI GGNNCC 4 cut(s) 94, 300, 386, 403
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 382
Bse1I ACTGG 1 cut(s) 448
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 270, 382
BseMII CTCAG 1 cut(s) 430
BseNI ACTGG 1 cut(s) 448
Bsh1285I CGRYCG 2 cut(s) 228, 356
BshFI GGCC 3 cut(s) 285, 301, 581
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 2 cut(s) 228, 356
BsiHKAI GWGCWC 1 cut(s) 112
BsiHKCI CYCGRG 2 cut(s) 105, 326
BsiSI CCGG 3 cut(s) 209, 282, 302
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 270, 382
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 3 cut(s) 285, 301, 581
BsoBI CYCGRG 2 cut(s) 105, 326
Bsp1286I GDGCHC 2 cut(s) 112, 362
Bsp143I GATC 3 cut(s) 52, 182, 465
BspACI CCGC 6 cut(s) 130, 228, 312, 322, 347, 352
BspANI GGCC 3 cut(s) 285, 301, 581
BspCNI CTCAG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 4 cut(s) 94, 300, 386, 403
BspPI GGATC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 3 cut(s) 52, 182, 465
Bst4CI ACNGT 2 cut(s) 265, 654
Bst6I CTCTTC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 457
BstDEI CTNAG 2 cut(s) 257, 416
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 55, 185, 468
BstMBI GATC 3 cut(s) 52, 182, 465
BstMCI CGRYCG 2 cut(s) 228, 356
BstMWI GCNNNNNNNGC 3 cut(s) 200, 209, 291
BstNSI RCATGY 3 cut(s) 176, 396, 605
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 510
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 3 cut(s) 285, 301, 581
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 284, 299, 385
Csp6I GTAC 3 cut(s) 162, 458, 624
CviAII CATG 6 cut(s) 17, 44, 56, 173, 393, 602
CviQI GTAC 3 cut(s) 162, 458, 624
DdeI CTNAG 2 cut(s) 257, 416
DpnI GATC 3 cut(s) 54, 184, 467
DpnII GATC 3 cut(s) 52, 182, 465
DraIII CACNNNGTG 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 385
Eco88I CYCGRG 2 cut(s) 105, 326
EcoO109I RGGNCCY 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 362
FaeI CATG 6 cut(s) 20, 47, 59, 176, 396, 605
FaiI YATR 9 cut(s) 18, 45, 57, 174, 338, 344, 394, 475, 603
FalI AAGNNNNNCTT 2 cut(s) 169, 201
FaqI GGGAC 1 cut(s) 398
FatI CATG 6 cut(s) 16, 43, 55, 172, 392, 601
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 2 cut(s) 130, 323
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 2 cut(s) 130, 323
FspBI CTAG 2 cut(s) 486, 630
GluI GCNGC 2 cut(s) 130, 323
HaeIII GGCC 3 cut(s) 285, 301, 581
HapII CCGG 3 cut(s) 209, 282, 302
Hin1II CATG 6 cut(s) 20, 47, 59, 176, 396, 605
HinfI GANTC 2 cut(s) 276, 541
HpaII CCGG 3 cut(s) 209, 282, 302
HphI GGTGA 2 cut(s) 110, 503
Hpy188I TCNGA 2 cut(s) 419, 470
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 265, 654
HpyCH4IV ACGT 2 cut(s) 456, 622
HpyCH4V TGCA 3 cut(s) 140, 176, 203
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 209, 291
HpyF3I CTNAG 2 cut(s) 257, 416
HpySE526I ACGT 2 cut(s) 456, 622
Hsp92II CATG 6 cut(s) 20, 47, 59, 176, 396, 605
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 3 cut(s) 52, 182, 465
LmnI GCTCC 1 cut(s) 610
LpnPI CCDG 7 cut(s) 90, 180, 222, 295, 315, 429, 605
LweI GCATC 1 cut(s) 149
MaeI CTAG 2 cut(s) 486, 630
MaeII ACGT 2 cut(s) 456, 622
MalI GATC 3 cut(s) 54, 184, 467
MbiI CCGCTC 1 cut(s) 132
MboI GATC 3 cut(s) 52, 182, 465
MboII GAAGA 5 cut(s) 73, 116, 177, 521, 629
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 112, 362
MluCI AATT 4 cut(s) 29, 198, 498, 554
MmeI TCCRAC 2 cut(s) 245, 296
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 3 cut(s) 71, 524, 557
MspI CCGG 3 cut(s) 209, 282, 302
MspR9I CCNGG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 200, 209, 291
NciI CCSGG 1 cut(s) 303
NdeII GATC 3 cut(s) 52, 182, 465
NlaIII CATG 6 cut(s) 20, 47, 59, 176, 396, 605
NlaIV GGNNCC 4 cut(s) 94, 300, 386, 403
NspI RCATGY 3 cut(s) 176, 396, 605
PaeR7I CTCGAG 1 cut(s) 105
PagI TCATGA 1 cut(s) 55
PciI ACATGT 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 276, 541
PkrI GCNGC 2 cut(s) 131, 324
Ppu21I YACGTR 1 cut(s) 457
PpuMI RGGWCCY 1 cut(s) 385
PscI ACATGT 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 385
PspN4I GGNNCC 4 cut(s) 94, 300, 386, 403
PspPI GGNCC 3 cut(s) 284, 299, 385
PspPPI RGGWCCY 1 cut(s) 385
PspXI VCTCGAGB 1 cut(s) 105
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 3 cut(s) 163, 459, 625
RsaNI GTAC 3 cut(s) 162, 458, 624
SaqAI TTAA 3 cut(s) 71, 524, 557
SatI GCNGC 2 cut(s) 130, 323
Sau3AI GATC 3 cut(s) 52, 182, 465
Sau96I GGNCC 3 cut(s) 284, 299, 385
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 2 cut(s) 112, 362
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 653
Sfr274I CTCGAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 385
SlaI CTCGAG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 4 cut(s) 29, 198, 498, 554
SsiI CCGC 6 cut(s) 130, 228, 312, 322, 347, 352
SspMI CTAG 2 cut(s) 486, 630
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 265, 654
TaiI ACGT 2 cut(s) 459, 625
TaqI TCGA 2 cut(s) 106, 143
TasI AATT 4 cut(s) 29, 198, 498, 554
TauI GCSGC 2 cut(s) 132, 325
TfiI GAWTC 2 cut(s) 276, 541
Tru1I TTAA 3 cut(s) 71, 524, 557
Tru9I TTAA 3 cut(s) 71, 524, 557
TspDTI ATGAA 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 498
XceI RCATGY 3 cut(s) 176, 396, 605
XhoI CTCGAG 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 2 cut(s) 486, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.