Rh1DG019000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011623
Physical Location & Seq
Reverse (-)
3074190 .. 3074636
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG019000.1

Sequence Viewer

Length: 447 bp
ATGGGGTCGCAACTATCGAGCACGGTTCAGTTCGTCCCTCTTGTCTCTTTGTTTCTCTCATTAACGTACAGATCGGGGGTTCTTTCTCATTCTCTATTTGGTTCGCTTCGAGGTTTGAGGCGGAATTCCGTTCGGCTGCCAATTGAACTGGTGGCTGCTGGTGGTTGTAAGATTTGGGATCTAGGGCGGTTCACGGATTCGACTGAGCCAGGATTGGATAGGGTTCGGCTGGAGTCCGTCCCCCACGGATGGCGGCGAGGGCACTTTCAATGGGACCAGGTTGTTGGGATAGCGCTGAGGTGGTTGGGCGAGGAACTAGTGTTCGCCCATTGTGGTGGCGCAGATCTGCTGGCATGGGGCTTGTCGGGTTTAGGCTTGGCTAGTCAGAGCCCTTTTGATCTGAGAGGGAGTTGGGTATGGCGGAGCATCTCCACAATCCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.35

Weight (kDa)

9.48

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 121, 187, 253, 421
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 1 cut(s) 68
AfeI AGCGCT 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 2 cut(s) 146, 269
AhlI ACTAGT 1 cut(s) 316
AjnI CCWGG 2 cut(s) 208, 276
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 186
Aor51HI AGCGCT 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 136, 155
ApoI RAATTY 1 cut(s) 124
AspLEI GCGC 2 cut(s) 295, 341
AspS9I GGNCC 1 cut(s) 274
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 264
BanII GRGCYC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 123, 142
BccI CCATC 1 cut(s) 243
BciT130I CCWGG 2 cut(s) 210, 278
BcoDI GTCTC 1 cut(s) 49
BcuI ACTAGT 1 cut(s) 316
BfaI CTAG 3 cut(s) 182, 317, 381
BfoI RGCGCY 1 cut(s) 296
BglII AGATCT 1 cut(s) 343
BisI GCNGC 3 cut(s) 137, 156, 254
BlsI GCNGC 3 cut(s) 138, 157, 255
Bme1390I CCNGG 2 cut(s) 210, 278
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 2 cut(s) 210, 278
BmsI GCATC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 210, 278
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 3 cut(s) 195, 287, 392
BseNI ACTGG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 2 cut(s) 123, 142
BsiHKAI GWGCWC 1 cut(s) 23
BslFI GGGAC 3 cut(s) 20, 224, 287
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 3 cut(s) 20, 224, 287
Bsp1286I GDGCHC 3 cut(s) 23, 264, 392
Bsp143I GATC 4 cut(s) 71, 178, 343, 397
BspACI CCGC 4 cut(s) 121, 187, 253, 421
BspCNI CTCAG 3 cut(s) 196, 288, 393
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 4 cut(s) 71, 178, 343, 397
Bst2UI CCWGG 2 cut(s) 210, 278
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 3 cut(s) 204, 296, 401
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 254
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 2 cut(s) 295, 341
BstKTI GATC 4 cut(s) 74, 181, 346, 400
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 4 cut(s) 71, 178, 343, 397
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNI CCWGG 2 cut(s) 210, 278
BstSCI CCNGG 2 cut(s) 208, 276
BstSLI GKGCMC 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 123, 142
BstX2I RGATCY 2 cut(s) 178, 343
BstXI CCANNNNNNTGG 2 cut(s) 284, 335
BstYI RGATCY 2 cut(s) 178, 343
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 2 cut(s) 295, 341
Cfr13I GGNCC 1 cut(s) 274
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 354
CviJI RGCY 8 cut(s) 136, 155, 208, 229, 360, 375, 380, 390
CviKI_1 RGCY 8 cut(s) 136, 155, 208, 229, 360, 375, 380, 390
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 3 cut(s) 204, 296, 401
DpnI GATC 4 cut(s) 73, 180, 345, 399
DpnII GATC 4 cut(s) 71, 178, 343, 397
EciI GGCGGA 2 cut(s) 136, 436
Eco24I GRGCYC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 274
Eco47III AGCGCT 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 208, 276
EcoT38I GRGCYC 1 cut(s) 392
FaeI CATG 1 cut(s) 357
FaiI YATR 2 cut(s) 355, 418
FaqI GGGAC 3 cut(s) 20, 224, 287
FatI CATG 1 cut(s) 353
Fnu4HI GCNGC 3 cut(s) 137, 156, 254
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 3 cut(s) 137, 156, 254
FspBI CTAG 3 cut(s) 182, 317, 381
GlaI GCGC 2 cut(s) 294, 340
GluI GCNGC 3 cut(s) 137, 156, 254
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 296
HhaI GCGC 2 cut(s) 295, 341
Hin1II CATG 1 cut(s) 357
Hin6I GCGC 2 cut(s) 293, 339
HinP1I GCGC 2 cut(s) 293, 339
HinfI GANTC 2 cut(s) 197, 233
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 387, 402
Hpy8I GTNNAC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 3 cut(s) 204, 296, 401
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 1 cut(s) 357
HspAI GCGC 2 cut(s) 293, 339
Kzo9I GATC 4 cut(s) 71, 178, 343, 397
LmnI GCTCC 1 cut(s) 423
LpnPI CCDG 8 cut(s) 134, 144, 195, 215, 222, 263, 290, 335
Lsp1109I GCAGC 2 cut(s) 123, 142
LweI GCATC 1 cut(s) 435
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 3 cut(s) 182, 317, 381
MaeII ACGT 1 cut(s) 65
MalI GATC 4 cut(s) 73, 180, 345, 399
MboI GATC 4 cut(s) 71, 178, 343, 397
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 2 cut(s) 178, 343
MhlI GDGCHC 3 cut(s) 23, 264, 392
MluCI AATT 2 cut(s) 124, 141
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 7 cut(s) 48, 104, 111, 251, 291, 304, 398
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 333
MspR9I CCNGG 2 cut(s) 210, 278
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 2 cut(s) 210, 278
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 4 cut(s) 71, 178, 343, 397
NlaIII CATG 1 cut(s) 357
NlaIV GGNNCC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 138, 157, 255
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 208, 276
PspGI CCWGG 2 cut(s) 208, 276
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 274
PsuI RGATCY 2 cut(s) 178, 343
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 3 cut(s) 137, 156, 254
Sau3AI GATC 4 cut(s) 71, 178, 343, 397
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 210, 278
SduI GDGCHC 3 cut(s) 23, 264, 392
SetI ASST 4 cut(s) 68, 115, 282, 302
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 1 cut(s) 435
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 333
SpeI ACTAGT 1 cut(s) 316
Sse9I AATT 2 cut(s) 124, 141
SsiI CCGC 4 cut(s) 121, 187, 253, 421
SspMI CTAG 3 cut(s) 182, 317, 381
StyD4I CCNGG 2 cut(s) 208, 276
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 17, 109, 200
TasI AATT 2 cut(s) 124, 141
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 2 cut(s) 136, 155
TspGWI ACGGA 4 cut(s) 118, 209, 226, 261
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 1 cut(s) 124
XspI CTAG 3 cut(s) 182, 317, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.