Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009650.1

Orthogroup ID

OG0011623

Physical Location & Seq

Genomic Coordinates Reverse (-)

30379 .. 32585

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009650.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgtggcgatggtttagaggttactgtgggcggagattaaagtgtgggaatcggaatggtggtatcggggacggagttgtagaaggagtggagggagggagggagggagagagagtgatatgctgtgcgtgcgcaaaaccctcggtcgcagagtcctcctttccaccaacgcccctcaacttggatacgctgtcgtttggacacatttcctccgtcagaaagctcagtttccctttcgagcatccggccttaaaagtcaagctactcggcttgtccaatggtttggtgtttgtagcgtttgatgatatcaatatttatatctggaacccgtcaattggattcttcaaggaactgccagttcccggtttttccgcagatcataaacagctgatctatcatggtgctggctatttgtttgccaccgacgactacaaagttttcgcagtctcatttgataggaatgaacggacagaagagatggagatattctccttgagagctcacgtttggaaaaccatcccacaccctggccataacagtcccttctttattcatcgggggacccttttgaatgaggcatttcattggttacactcacatccagctgataacctatccacaggtttcttggttatggaaggtagtacaattgccaagaaatggattgacgacgagacctggttggtaaagattgatcataaagcagaaccggaacttggcatgtatatgactcgaggcaactcgcttagcatgattccatatgaagatagtctacttaggattactgatctgtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.9

Weight (kDa)

6.3

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011623)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008557 RLG00000014754 RLG00000017617
rosa_multiflora	Rmu_sc0002748.1_g000007 Rmu_sc0009650.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252120 Rroxscaffold_6G00391710
rosa_samantha	Rh1AG247100 Rh1DG019000 Rh2AG131900 Rh2CG259400 Rh5BG386400 Rh5DG049100 Rh5DG273000 Rh6BG525300 Rh6DG516800 Rh7AG182500 Rh7AG466100 Rh7CG192000 Rh7DG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	133
AccB7I	CCANNNNNTGG	2 cut(s)	527, 660
AccI	GTMKAC	1 cut(s)	772
AciI	CCGC	2 cut(s)	31, 372
AcoI	YGGCCR	1 cut(s)	529
AfaI	GTAC	1 cut(s)	646
AfiI	CCNNNNNNNGG	6 cut(s)	181, 335, 362, 527, 660, 716
AgsI	TTSAA	2 cut(s)	346, 571
AjnI	CCWGG	2 cut(s)	526, 677
AjuI	GAANNNNNNNTTGG	2 cut(s)	699, 731
AluBI	AGCT	5 cut(s)	223, 262, 388, 500, 605
AluI	AGCT	5 cut(s)	223, 262, 388, 500, 605
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	2 cut(s)	451, 668
Ama87I	CYCGRG	1 cut(s)	732
AoxI	GGCC	2 cut(s)	246, 529
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	561
AsuC2I	CCSGG	1 cut(s)	363
AvaI	CYCGRG	1 cut(s)	732
AvaII	GGWCC	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	502
BarI	GAAGNNNNNNTAC	2 cut(s)	756, 788
Bbv12I	GWGCWC	1 cut(s)	502
BccI	CCATC	3 cut(s)	3, 472, 524
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BciT130I	CCWGG	2 cut(s)	528, 679
BciVI	GTATCC	1 cut(s)	178
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	451, 668
BfuI	GTATCC	1 cut(s)	178
BlpI	GCTNAGC	1 cut(s)	746
Bme1390I	CCNGG	3 cut(s)	363, 528, 679
Bme18I	GGWCC	1 cut(s)	561
BmeT110I	CYCGRG	1 cut(s)	732
BmgT120I	GGNCC	1 cut(s)	561
BmiI	GGNNCC	3 cut(s)	326, 562, 563
BmrFI	CCNGG	3 cut(s)	363, 528, 679
BmsI	GCATC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
Bpu1102I	GCTNAGC	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	141, 526
BsaWI	WCCGGW	1 cut(s)	709
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 194, 224
Bsc4I	CCNNNNNNNGG	6 cut(s)	181, 335, 362, 527, 660, 716
Bse1I	ACTGG	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	528, 679
BseDI	CCNNGG	2 cut(s)	141, 526
BseGI	GGATG	3 cut(s)	241, 516, 598
BseLI	CCNNNNNNNGG	6 cut(s)	181, 335, 362, 527, 660, 716
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	248, 531
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	732
BsiSI	CCGG	3 cut(s)	245, 363, 710
BslFI	GGGAC	3 cut(s)	83, 525, 574
BslI	CCNNNNNNNGG	6 cut(s)	181, 335, 362, 527, 660, 716
BsmAI	GTCTC	2 cut(s)	451, 668
BsmFI	GGGAC	3 cut(s)	83, 525, 574
BsnI	GGCC	2 cut(s)	248, 531
Bso31I	GGTCTC	1 cut(s)	668
BsoBI	CYCGRG	1 cut(s)	732
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	376, 390, 694, 787
Bsp1720I	GCTNAGC	1 cut(s)	746
BspACI	CCGC	2 cut(s)	31, 372
BspANI	GGCC	2 cut(s)	248, 531
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	326, 562, 563
BspTNI	GGTCTC	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	141, 526
BssMI	GATC	4 cut(s)	376, 390, 694, 787
Bst2UI	CCWGG	2 cut(s)	528, 679
Bst4CI	ACNGT	2 cut(s)	26, 539
Bst6I	CTCTTC	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	130, 406
BstDEI	CTNAG	3 cut(s)	224, 746, 776
BstF5I	GGATG	3 cut(s)	241, 516, 598
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	4 cut(s)	379, 393, 697, 790
BstMAI	GTCTC	2 cut(s)	451, 668
BstMBI	GATC	4 cut(s)	376, 390, 694, 787
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	2 cut(s)	528, 679
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	3 cut(s)	361, 526, 677
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	248, 531
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	241, 516, 598
Cac8I	GCNNGC	2 cut(s)	130, 406
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	561
CsiI	ACCWGGT	1 cut(s)	677
Csp6I	GTAC	1 cut(s)	645
CviAII	CATG	3 cut(s)	398, 721, 751
CviJI	RGCY	9 cut(s)	223, 248, 262, 270, 388, 408, 500, 531, 605
CviKI_1	RGCY	9 cut(s)	223, 248, 262, 270, 388, 408, 500, 531, 605
CviQI	GTAC	1 cut(s)	645
DdeI	CTNAG	3 cut(s)	224, 746, 776
DpnI	GATC	4 cut(s)	378, 392, 696, 789
DpnII	GATC	4 cut(s)	376, 390, 694, 787
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EciI	GGCGGA	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	500
Eco24I	GRGCYC	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	668
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	732
EcoICRI	GAGCTC	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	526, 677
EcoRV	GATATC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	502
FaeI	CATG	3 cut(s)	401, 724, 754
FaqI	GGGAC	3 cut(s)	83, 525, 574
FatI	CATG	3 cut(s)	397, 720, 750
FauNDI	CATATG	1 cut(s)	760
FbaI	TGATCA	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	772
FokI	GGATG	3 cut(s)	228, 503, 585
FriOI	GRGCYC	1 cut(s)	502
FspI	TGCGCA	1 cut(s)	133
GlaI	GCGC	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	248, 531
HapII	CCGG	3 cut(s)	245, 363, 710
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	401, 724, 754
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	5 cut(s)	49, 152, 339, 730, 754
HpaII	CCGG	3 cut(s)	245, 363, 710
Hpy166II	GTNNAC	1 cut(s)	773
Hpy188I	TCNGA	2 cut(s)	54, 218
Hpy188III	TCNNGA	2 cut(s)	322, 795
Hpy8I	GTNNAC	1 cut(s)	773
Hpy99I	CGWCG	2 cut(s)	428, 674
HpyAV	CCTTC	3 cut(s)	77, 553, 632
HpyCH4III	ACNGT	2 cut(s)	26, 539
HpyCH4IV	ACGT	1 cut(s)	504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	3 cut(s)	224, 746, 776
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	401, 724, 754
HspAI	GCGC	1 cut(s)	132
KflI	GGGWCCC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	376, 390, 694, 787
LweI	GCATC	1 cut(s)	250
MabI	ACCWGGT	1 cut(s)	677
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	20, 588
MalI	GATC	4 cut(s)	378, 392, 696, 789
MboI	GATC	4 cut(s)	376, 390, 694, 787
MboII	GAAGA	3 cut(s)	334, 485, 776
MfeI	CAATTG	2 cut(s)	333, 648
MhlI	GDGCHC	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	2 cut(s)	333, 648
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	2 cut(s)	161, 724
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	2 cut(s)	38, 251
MslI	CAYNNNNRTG	1 cut(s)	725
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	388, 605
MspI	CCGG	3 cut(s)	245, 363, 710
MspR9I	CCNGG	3 cut(s)	363, 528, 679
MunI	CAATTG	2 cut(s)	333, 648
MvaI	CCWGG	2 cut(s)	528, 679
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	4 cut(s)	376, 390, 694, 787
NlaIII	CATG	3 cut(s)	401, 724, 754
NlaIV	GGNNCC	3 cut(s)	326, 562, 563
NmeAIII	GCCGAG	1 cut(s)	246
NsbI	TGCGCA	1 cut(s)	133
NspI	RCATGY	1 cut(s)	724
PaeR7I	CTCGAG	1 cut(s)	732
PfeI	GAWTC	3 cut(s)	49, 339, 754
PflMI	CCANNNNNTGG	2 cut(s)	527, 660
PleI	GAGTC	2 cut(s)	160, 724
PpsI	GAGTC	2 cut(s)	160, 724
PpuMI	RGGWCCY	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	526, 677
PspGI	CCWGG	2 cut(s)	526, 677
PspN4I	GGNNCC	3 cut(s)	326, 562, 563
PspPI	GGNCC	1 cut(s)	561
PspPPI	RGGWCCY	1 cut(s)	561
PspXI	VCTCGAGB	1 cut(s)	732
PvuII	CAGCTG	2 cut(s)	388, 605
RsaI	GTAC	1 cut(s)	646
RsaNI	GTAC	1 cut(s)	645
RseI	CAYNNNNRTG	1 cut(s)	725
SacI	GAGCTC	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	38, 251
Sau3AI	GATC	4 cut(s)	376, 390, 694, 787
Sau96I	GGNCC	1 cut(s)	561
SchI	GAGTC	2 cut(s)	161, 724
ScrFI	CCNGG	3 cut(s)	363, 528, 679
SduI	GDGCHC	1 cut(s)	502
SexAI	ACCWGGT	1 cut(s)	677
SfaNI	GCATC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	561
SlaI	CTCGAG	1 cut(s)	732
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	2 cut(s)	493, 732
SmoI	CTYRAG	2 cut(s)	493, 732
Sse9I	AATT	2 cut(s)	333, 648
SsiI	CCGC	2 cut(s)	31, 372
SspI	AATATT	1 cut(s)	313
SstI	GAGCTC	1 cut(s)	502
StyD4I	CCNGG	3 cut(s)	361, 526, 677
TaaI	ACNGT	2 cut(s)	26, 539
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	2 cut(s)	237, 733
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	2 cut(s)	333, 648
TatI	WGTACW	1 cut(s)	644
TfiI	GAWTC	3 cut(s)	49, 339, 754
Tru1I	TTAA	2 cut(s)	38, 251
Tru9I	TTAA	2 cut(s)	38, 251
TspDTI	ATGAA	4 cut(s)	477, 542, 572, 777
TspGWI	ACGGA	3 cut(s)	87, 202, 481
Van91I	CCANNNNNTGG	2 cut(s)	527, 660
VpaK11BI	GGWCC	1 cut(s)	561
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XhoI	CTCGAG	1 cut(s)	732
XmiI	GTMKAC	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.