Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011623

Physical Location & Seq

Genomic Coordinates Forward (+)

16219933 .. 16220292

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG182500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGCCACGATGTTGGGACGGAGCCAAGATTCTGGCCAAGCTGGGCTCGATTGAAATCGAGTTTTGGGATGGCGGCGAGGGGGTTGGGTGAGGAACTCGAGTTCGCCCATCATGGTGGTATGGAGCTGCTGGCATGGGGCTTGTCGGGTTCAGGCTCGGCTAGTCAGAGGCCTTCCGATCTGAGAGGGAAATGGTTATGGCGGAGCATTTTCACAATCCTGTTTCGTAACAGGATCCGAGCCAAGGAGGGCAGCGCCGGTGAAAGTGTTTTGAGACGTGGTGACGAGGGTGGGATCCGCCTTCTCCGGTGGAATTCAGACGGGGATATAGGTGCGGTTCCTCGGATCAGTAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

10.63

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011623)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008557 RLG00000014754 RLG00000017617
rosa_multiflora	Rmu_sc0002748.1_g000007 Rmu_sc0009650.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252120 Rroxscaffold_6G00391710
rosa_samantha	Rh1AG247100 Rh1DG019000 Rh2AG131900 Rh2CG259400 Rh5BG386400 Rh5DG049100 Rh5DG273000 Rh6BG525300 Rh6DG516800 Rh7AG182500 Rh7AG466100 Rh7CG192000 Rh7DG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	74, 202, 298, 335
AclWI	GGATC	5 cut(s)	229, 242, 289, 302, 353
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	55
AjiI	CACGTC	1 cut(s)	278
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	42, 127
AluI	AGCT	2 cut(s)	42, 127
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	5 cut(s)	229, 242, 289, 302, 353
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	4, 35, 170
ApeKI	GCWGC	2 cut(s)	127, 252
ApoI	RAATTY	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	101, 272, 293
AvaI	CYCGRG	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	37
BamHI	GGATCC	2 cut(s)	234, 294
BanII	GRGCYC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	114, 264
BccI	CCATC	2 cut(s)	64, 117
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	3 cut(s)	75, 128, 253
BlsI	GCNGC	3 cut(s)	76, 129, 254
BmeT110I	CYCGRG	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	24, 236, 296, 339
BsaBI	GATNNNNATC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	243, 341
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	243, 341
BseGI	GGATG	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	114, 264
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	3 cut(s)	6, 37, 172
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	258, 307
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	268
BsmBI	CGTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	3 cut(s)	6, 37, 172
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	178, 234, 294, 345
BspACI	CCGC	4 cut(s)	74, 202, 298, 335
BspANI	GGCC	3 cut(s)	6, 37, 172
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	4 cut(s)	24, 236, 296, 339
BspPI	GGATC	5 cut(s)	229, 242, 289, 302, 353
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	243, 341
BssMI	GATC	4 cut(s)	178, 234, 294, 345
BssT1I	CCWWGG	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	4 cut(s)	181, 237, 297, 348
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	4 cut(s)	178, 234, 294, 345
BstV1I	GCAGC	2 cut(s)	114, 264
BstX2I	RGATCY	2 cut(s)	234, 294
BstXI	CCANNNNNNTGG	3 cut(s)	14, 33, 116
BstYI	RGATCY	2 cut(s)	234, 294
BsuRI	GGCC	3 cut(s)	6, 37, 172
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	113, 135
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	4 cut(s)	180, 236, 296, 347
DpnII	GATC	4 cut(s)	178, 234, 294, 345
EaeI	YGGCCR	1 cut(s)	35
EciI	GGCGGA	2 cut(s)	217, 287
Eco130I	CCWWGG	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	2 cut(s)	116, 138
FaiI	YATR	5 cut(s)	114, 122, 136, 199, 329
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	112, 134
Fnu4HI	GCNGC	3 cut(s)	75, 128, 253
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	3 cut(s)	75, 128, 253
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	3 cut(s)	75, 128, 253
GsaI	CCCAGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	6, 37, 172
HapII	CCGG	2 cut(s)	258, 307
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	2 cut(s)	116, 138
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	2 cut(s)	258, 307
HphI	GGTGA	3 cut(s)	101, 272, 293
Hpy188I	TCNGA	6 cut(s)	168, 178, 183, 239, 319, 345
HpyAV	CCTTC	2 cut(s)	183, 311
HpyCH4IV	ACGT	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	116, 138
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	178, 234, 294, 345
LmnI	GCTCC	3 cut(s)	22, 124, 204
LpnPI	CCDG	8 cut(s)	19, 28, 116, 138, 217, 233, 271, 320
Lsp1109I	GCAGC	2 cut(s)	114, 264
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	2 cut(s)	227, 281
MalI	GATC	4 cut(s)	180, 236, 296, 347
MboI	GATC	4 cut(s)	178, 234, 294, 345
MflI	RGATCY	2 cut(s)	234, 294
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	1 cut(s)	313
MluNI	TGGCCA	1 cut(s)	37
MnlI	CCTC	7 cut(s)	72, 85, 162, 179, 241, 280, 351
Mox20I	TGGCCA	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	37
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	37
MspI	CCGG	2 cut(s)	258, 307
NdeII	GATC	4 cut(s)	178, 234, 294, 345
NlaIII	CATG	2 cut(s)	116, 138
NlaIV	GGNNCC	4 cut(s)	24, 236, 296, 339
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	76, 129, 254
PspFI	CCCAGC	1 cut(s)	42
PspN4I	GGNNCC	4 cut(s)	24, 236, 296, 339
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	234, 294
RseI	CAYNNNNRTG	1 cut(s)	114
SatI	GCNGC	3 cut(s)	75, 128, 253
Sau3AI	GATC	4 cut(s)	178, 234, 294, 345
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	4 cut(s)	44, 129, 280, 334
Sfr274I	CTCGAG	1 cut(s)	98
SgrAI	CRCCGGYG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	313
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	4 cut(s)	74, 202, 298, 335
SspMI	CTAG	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	3 cut(s)	49, 59, 99
TasI	AATT	1 cut(s)	313
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	127, 252
Tsp45I	GTSAC	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	35
XapI	RAATTY	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.