Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011623

Physical Location & Seq

Genomic Coordinates Forward (+)

57241078 .. 57242920

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014754

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCCAAGCTTCTCTACACCTGCCTCCATCTTCGATGGAGAAAAATTCTGGCCCTTCCTATGGGGTCGCAGCTATCGAGCACGGCTCAGTCCGTCCCTCTTGTCTCTTTGTTTCTCTCATTGACGTCGAGATCGGGGGTTCTTTCTCCTTCTCTATTTGGTTCGCTTCGAGGTTTGAGGCGGAACTCCGTTCGGCTGCCAACTGAACTAGTGGCTGCTAGTGATTGGAAGATTTGGGATCTAGGGCGGTTCACGGATTCGACTGAGCCAGGATTGGATCAGGTTCGACTGGAGTCCGTCCCCCACGGATGGCGGCGAGGGCGCTTTCAAAGGGACCAGGTTGTTGGGACGGCGCTGAGGTGGTTGGGCGAGGAACTCGTGTTCGCCTATCGTGGTGGCGCAGATCTGCTGGCATGGGGCTTGTCGGGTTTAGGCTTGGCTAGTCAGAGCCCCTTCGATCTGAAAGGGAGTTGGGTATGGCGGAGCATCTCCACAATCCTGTTTCGTAACAGGATCAGGGCCATGGAGGGCAGCGCCGGTGAAAGTGTTTGGCGTCGTGGTGACGAGGGTGGGAACGGCCTTCTCCGGTGGATTTCGGGTGGGGATATCGGTCCCTCAAATCCAAATGACTGTTGTGGAGGCAATTGCTTCCCTCTTGGGGAGGTTGGCCATCAGAGGCGACTGAGCCTCATTGGAGTAGGCGGTGGTAGAAGAAAGAAGTGCATGTGTTTTTTTAGTGATGGAGTTGGTGACTACAAATCCGGCGGTGCTCGAGCTGGATCGGTTCATGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

28.94

Weight (kDa)

10.04

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011623)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008557 RLG00000014754 RLG00000017617
rosa_multiflora	Rmu_sc0002748.1_g000007 Rmu_sc0009650.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252120 Rroxscaffold_6G00391710
rosa_samantha	Rh1AG247100 Rh1DG019000 Rh2AG131900 Rh2CG259400 Rh5BG386400 Rh5DG049100 Rh5DG273000 Rh6BG525300 Rh6DG516800 Rh7AG182500 Rh7AG466100 Rh7CG192000 Rh7DG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
AatII	GACGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	29
AciI	CCGC	6 cut(s)	181, 247, 313, 481, 702, 765
AclWI	GGATC	4 cut(s)	246, 285, 521, 787
AcoI	YGGCCR	2 cut(s)	3, 667
AcsI	RAATTY	1 cut(s)	45
AcyI	GRCGYC	2 cut(s)	125, 553
AfiI	CCNNNNNNNGG	3 cut(s)	61, 309, 658
AgsI	TTSAA	1 cut(s)	329
AhlI	ACTAGT	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	268, 336
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	3 cut(s)	10, 73, 776
AluI	AGCT	3 cut(s)	10, 73, 776
Alw21I	GWGCWC	2 cut(s)	83, 772
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	4 cut(s)	246, 285, 521, 787
Ama87I	CYCGRG	1 cut(s)	771
AoxI	GGCC	5 cut(s)	3, 51, 519, 577, 667
ApeKI	GCWGC	4 cut(s)	70, 196, 215, 531
ApoI	RAATTY	1 cut(s)	45
AspLEI	GCGC	4 cut(s)	324, 355, 401, 536
AspS9I	GGNCC	4 cut(s)	52, 334, 519, 611
AsuHPI	GGTGA	3 cut(s)	551, 572, 761
AvaI	CYCGRG	1 cut(s)	771
AvaII	GGWCC	2 cut(s)	334, 611
BalI	TGGCCA	2 cut(s)	5, 669
BanII	GRGCYC	1 cut(s)	452
BauI	CACGAG	1 cut(s)	377
Bbv12I	GWGCWC	2 cut(s)	83, 772
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	4 cut(s)	82, 183, 202, 543
BccI	CCATC	5 cut(s)	30, 36, 303, 678, 734
BceAI	ACGGC	3 cut(s)	99, 366, 592
BciT130I	CCWGG	2 cut(s)	270, 338
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	109
BcuI	ACTAGT	1 cut(s)	208
BfaI	CTAG	4 cut(s)	209, 219, 242, 441
BfoI	RGCGCY	3 cut(s)	325, 356, 537
BfuAI	ACCTGC	1 cut(s)	29
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	5 cut(s)	71, 197, 216, 314, 532
BlsI	GCNGC	5 cut(s)	72, 198, 217, 315, 533
Bme1390I	CCNGG	2 cut(s)	270, 338
Bme18I	GGWCC	2 cut(s)	334, 611
BmeT110I	CYCGRG	1 cut(s)	771
BmgT120I	GGNCC	4 cut(s)	52, 334, 519, 611
BmiI	GGNNCC	2 cut(s)	335, 613
BmrFI	CCNGG	2 cut(s)	270, 338
BmsI	GCATC	1 cut(s)	495
BoxI	GACNNNNGTC	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	125, 553
BsaJI	CCNNGG	2 cut(s)	304, 522
BsaWI	WCCGGW	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 309, 658
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	270, 338
BseDI	CCNNGG	2 cut(s)	304, 522
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	3 cut(s)	61, 309, 658
BseMII	CTCAG	4 cut(s)	101, 255, 347, 674
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	82, 183, 202, 543
BshFI	GGCC	5 cut(s)	5, 53, 521, 579, 669
BsiHKAI	GWGCWC	2 cut(s)	83, 772
BsiHKCI	CYCGRG	1 cut(s)	771
BsiSI	CCGG	3 cut(s)	537, 586, 762
BslFI	GGGAC	5 cut(s)	80, 284, 347, 361, 597
BslI	CCNNNNNNNGG	3 cut(s)	61, 309, 658
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	5 cut(s)	80, 284, 347, 361, 597
BsnI	GGCC	5 cut(s)	5, 53, 521, 579, 669
BsoBI	CYCGRG	1 cut(s)	771
Bsp1286I	GDGCHC	3 cut(s)	83, 452, 772
Bsp143I	GATC	8 cut(s)	131, 238, 277, 403, 457, 513, 779, 790
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	6 cut(s)	181, 247, 313, 481, 702, 765
BspANI	GGCC	5 cut(s)	5, 53, 521, 579, 669
BspCNI	CTCAG	4 cut(s)	100, 256, 348, 675
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	2 cut(s)	335, 613
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	4 cut(s)	246, 285, 521, 787
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	304, 522
BssMI	GATC	8 cut(s)	131, 238, 277, 403, 457, 513, 779, 790
BssNI	GRCGYC	2 cut(s)	125, 553
BssSI	CACGAG	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	270, 338
Bst4CI	ACNGT	1 cut(s)	632
BstACI	GRCGYC	2 cut(s)	125, 553
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	4 cut(s)	87, 264, 356, 683
BstDSI	CCRYGG	2 cut(s)	304, 522
BstF5I	GGATG	1 cut(s)	314
BstH2I	RGCGCY	3 cut(s)	325, 356, 537
BstHHI	GCGC	4 cut(s)	324, 355, 401, 536
BstKTI	GATC	8 cut(s)	134, 241, 280, 406, 460, 516, 782, 793
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	8 cut(s)	131, 238, 277, 403, 457, 513, 779, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	2 cut(s)	270, 338
BstNSI	RCATGY	1 cut(s)	727
BstPAI	GACNNNNGTC	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	268, 336
BstV1I	GCAGC	4 cut(s)	82, 183, 202, 543
BstX2I	RGATCY	2 cut(s)	238, 403
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	2 cut(s)	238, 403
BsuRI	GGCC	5 cut(s)	5, 53, 521, 579, 669
BtgI	CCRYGG	2 cut(s)	304, 522
BtsCI	GGATG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	411
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	4 cut(s)	324, 355, 401, 536
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	4 cut(s)	52, 334, 519, 611
CseI	GACGC	1 cut(s)	542
CsiI	ACCWGGT	1 cut(s)	336
CviAII	CATG	4 cut(s)	414, 523, 724, 788
DdeI	CTNAG	4 cut(s)	87, 264, 356, 683
DpnI	GATC	8 cut(s)	133, 240, 279, 405, 459, 515, 781, 792
DpnII	GATC	8 cut(s)	131, 238, 277, 403, 457, 513, 779, 790
EaeI	YGGCCR	2 cut(s)	3, 667
EciI	GGCGGA	2 cut(s)	196, 496
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	452
Eco32I	GATATC	1 cut(s)	607
Eco47I	GGWCC	2 cut(s)	334, 611
Eco88I	CYCGRG	1 cut(s)	771
EcoRII	CCWGG	2 cut(s)	268, 336
EcoRV	GATATC	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	4 cut(s)	417, 526, 727, 791
FaiI	YATR	6 cut(s)	62, 415, 478, 524, 725, 789
FaqI	GGGAC	5 cut(s)	80, 284, 347, 361, 597
FatI	CATG	4 cut(s)	413, 522, 723, 787
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	5 cut(s)	71, 197, 216, 314, 532
FokI	GGATG	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	5 cut(s)	71, 197, 216, 314, 532
FspBI	CTAG	4 cut(s)	209, 219, 242, 441
GlaI	GCGC	4 cut(s)	323, 354, 400, 535
GluI	GCNGC	5 cut(s)	71, 197, 216, 314, 532
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	3 cut(s)	325, 356, 537
HaeIII	GGCC	5 cut(s)	5, 53, 521, 579, 669
HapII	CCGG	3 cut(s)	537, 586, 762
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	4 cut(s)	324, 355, 401, 536
Hin1I	GRCGYC	2 cut(s)	125, 553
Hin1II	CATG	4 cut(s)	417, 526, 727, 791
Hin6I	GCGC	4 cut(s)	322, 353, 399, 534
HinP1I	GCGC	4 cut(s)	322, 353, 399, 534
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	257, 293
HpaII	CCGG	3 cut(s)	537, 586, 762
HphI	GGTGA	3 cut(s)	551, 572, 761
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	3 cut(s)	447, 462, 675
Hpy188III	TCNNGA	2 cut(s)	129, 788
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	130, 558
HpyAV	CCTTC	4 cut(s)	65, 159, 463, 590
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	723
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	4 cut(s)	87, 264, 356, 683
HpySE526I	ACGT	1 cut(s)	125
Hsp92I	GRCGYC	2 cut(s)	125, 553
Hsp92II	CATG	4 cut(s)	417, 526, 727, 791
HspAI	GCGC	4 cut(s)	322, 353, 399, 534
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	8 cut(s)	131, 238, 277, 403, 457, 513, 779, 790
LmnI	GCTCC	1 cut(s)	483
Lsp1109I	GCAGC	4 cut(s)	82, 183, 202, 543
LweI	GCATC	1 cut(s)	495
MabI	ACCWGGT	1 cut(s)	336
MaeI	CTAG	4 cut(s)	209, 219, 242, 441
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	3 cut(s)	506, 560, 749
MalI	GATC	8 cut(s)	133, 240, 279, 405, 459, 515, 781, 792
MboI	GATC	8 cut(s)	131, 238, 277, 403, 457, 513, 779, 790
MboII	GAAGA	3 cut(s)	23, 241, 723
MfeI	CAATTG	1 cut(s)	643
MflI	RGATCY	2 cut(s)	238, 403
MhlI	GDGCHC	3 cut(s)	83, 452, 772
MlsI	TGGCCA	2 cut(s)	5, 669
MluCI	AATT	2 cut(s)	45, 643
MluNI	TGGCCA	2 cut(s)	5, 669
MlyI	GAGTC	1 cut(s)	302
Mox20I	TGGCCA	2 cut(s)	5, 669
MscI	TGGCCA	2 cut(s)	5, 669
Msp20I	TGGCCA	2 cut(s)	5, 669
MspI	CCGG	3 cut(s)	537, 586, 762
MspR9I	CCNGG	2 cut(s)	270, 338
MunI	CAATTG	1 cut(s)	643
MvaI	CCWGG	2 cut(s)	270, 338
MwoI	GCNNNNNNNGC	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	8 cut(s)	131, 238, 277, 403, 457, 513, 779, 790
NlaIII	CATG	4 cut(s)	417, 526, 727, 791
NlaIV	GGNNCC	2 cut(s)	335, 613
NmuCI	GTSAC	2 cut(s)	560, 749
NspI	RCATGY	1 cut(s)	727
PaeR7I	CTCGAG	1 cut(s)	771
PagI	TCATGA	1 cut(s)	787
PaqCI	CACCTGC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	5 cut(s)	72, 198, 217, 315, 533
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PshAI	GACNNNNGTC	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	268, 336
PspGI	CCWGG	2 cut(s)	268, 336
PspN4I	GGNNCC	2 cut(s)	335, 613
PspPI	GGNCC	4 cut(s)	52, 334, 519, 611
PspXI	VCTCGAGB	1 cut(s)	771
PsuI	RGATCY	2 cut(s)	238, 403
SatI	GCNGC	5 cut(s)	71, 197, 216, 314, 532
Sau3AI	GATC	8 cut(s)	131, 238, 277, 403, 457, 513, 779, 790
Sau96I	GGNCC	4 cut(s)	52, 334, 519, 611
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	270, 338
SduI	GDGCHC	3 cut(s)	83, 452, 772
SexAI	ACCWGGT	1 cut(s)	336
SfaNI	GCATC	1 cut(s)	495
Sfr274I	CTCGAG	1 cut(s)	771
SgrAI	CRCCGGYG	1 cut(s)	536
SinI	GGWCC	2 cut(s)	334, 611
SlaI	CTCGAG	1 cut(s)	771
SmlI	CTYRAG	1 cut(s)	771
SmoI	CTYRAG	1 cut(s)	771
SpeI	ACTAGT	1 cut(s)	208
Sse9I	AATT	2 cut(s)	45, 643
SsiI	CCGC	6 cut(s)	181, 247, 313, 481, 702, 765
SspMI	CTAG	4 cut(s)	209, 219, 242, 441
StyD4I	CCNGG	2 cut(s)	268, 336
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	8 cut(s)	34, 77, 128, 169, 260, 286, 456, 772
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	2 cut(s)	45, 643
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	257
TseFI	GTSAC	2 cut(s)	560, 749
TseI	GCWGC	4 cut(s)	70, 196, 215, 531
Tsp45I	GTSAC	2 cut(s)	560, 749
TspDTI	ATGAA	1 cut(s)	776
TspGWI	ACGGA	5 cut(s)	82, 178, 269, 286, 321
VpaK11BI	GGWCC	2 cut(s)	334, 611
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	727
XhoI	CTCGAG	1 cut(s)	771
XspI	CTAG	4 cut(s)	209, 219, 242, 441
ZraI	GACGTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.