Rroxscaffold_6G00391710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011623
Physical Location & Seq
Forward (+)
10366466 .. 10367753
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391710.1

Sequence Viewer

Length: 612 bp
ATGGATGAGGGAGGCACGTGTCGTCTGCGAGAGGCCGGGAGAGCTCCGCCTCCGGCCTCTCTGTACCTTTCTCCATCATCGATGGAGTACTGTTCCGATGTCGTCCTTGGTGTCGGTTGTTGTGCTCATGGCTCCCGTCGTGCCTTGTATCGGGTCGTGGTTCGCATCTCGGCTGTGGTAGGTTCTTTCGATCGATTTGTTCGATCGTGTGTTGCGTCAATGGGAAGAAGCCATGGATGTGGTGCTTTCCGCATCCGCTTGGCCGTAGTGCTTTTCGCCGCAGTGGGGAAGAGGCTGCGTTCCGTTCTGGTTTGGGACGACGTCAAGATTCCGACCAAGCCGGCTCGACCGAAATCGAGGTTTAGGGATGGCGACGAGGTGTTTGGGCGAGGAACTAGAGTTAGACCATCGTGGTGGTGGGGAGCCGCGCCACGGGGTTTGTCGCGATCGAGCTCGGCTAGTCGAGTCTCTCCGATCCGAGAGGGACCGGGTGTGGCGGAGCACCAGTGCGATCCCGGTCGAACCAAGATCCGCGCCGCCGAAGGTGTTTGGTGGCGAGGTGACGAGGGTGGGATCGGTCCGGGCGAGATCTACGTTCGGCTGGTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.07

Weight (kDa)

10.42

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
AccII CGCG 3 cut(s) 428, 445, 534
AciI CCGC 8 cut(s) 47, 250, 256, 279, 426, 497, 532, 537
AclWI GGATC 4 cut(s) 469, 506, 523, 581
AcoI YGGCCR 1 cut(s) 261
AcvI CACGTG 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 2 cut(s) 65, 89
AfiI CCNNNNNNNGG 3 cut(s) 150, 285, 432
AflIII ACRYGT 1 cut(s) 17
AluBI AGCT 2 cut(s) 44, 453
AluI AGCT 2 cut(s) 44, 453
Alw21I GWGCWC 4 cut(s) 46, 127, 455, 504
Alw26I GTCTC 1 cut(s) 472
AlwI GGATC 4 cut(s) 469, 506, 523, 581
AoxI GGCC 3 cut(s) 33, 54, 261
ApeKI GCWGC 1 cut(s) 295
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AspLEI GCGC 2 cut(s) 430, 536
AspS9I GGNCC 2 cut(s) 485, 578
AsuC2I CCSGG 4 cut(s) 37, 489, 516, 582
AsuHPI GGTGA 1 cut(s) 572
AvaII GGWCC 2 cut(s) 485, 578
BanII GRGCYC 2 cut(s) 46, 455
BbrPI CACGTG 1 cut(s) 18
Bbv12I GWGCWC 4 cut(s) 46, 127, 455, 504
BbvI GCAGC 1 cut(s) 282
BccI CCATC 4 cut(s) 76, 82, 362, 415
BceAI ACGGC 1 cut(s) 248
BcnI CCSGG 4 cut(s) 37, 489, 516, 582
BcoDI GTCTC 1 cut(s) 472
BfaI CTAG 2 cut(s) 396, 459
BglII AGATCT 1 cut(s) 588
BisI GCNGC 4 cut(s) 279, 296, 426, 537
BlsI GCNGC 4 cut(s) 280, 297, 427, 538
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 4 cut(s) 37, 489, 516, 582
Bme18I GGWCC 2 cut(s) 485, 578
BmgT120I GGNCC 2 cut(s) 485, 578
BmiI GGNNCC 3 cut(s) 133, 424, 486
BmrFI CCNGG 4 cut(s) 37, 489, 516, 582
BmsI GCATC 2 cut(s) 174, 261
BpuMI CCSGG 4 cut(s) 37, 489, 516, 582
Bsa29I ATCGAT 2 cut(s) 80, 193
BsaAI YACGTR 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 106, 232, 431
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 285, 432
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 505
BseCI ATCGAT 2 cut(s) 80, 193
BseDI CCNNGG 3 cut(s) 106, 232, 431
BseGI GGATG 4 cut(s) 10, 242, 252, 373
BseLI CCNNNNNNNGG 3 cut(s) 150, 285, 432
BseNI ACTGG 1 cut(s) 505
BseXI GCAGC 1 cut(s) 282
Bsh1236I CGCG 3 cut(s) 428, 445, 534
Bsh1285I CGRYCG 5 cut(s) 193, 206, 350, 449, 520
BshFI GGCC 3 cut(s) 35, 56, 263
BshVI ATCGAT 2 cut(s) 80, 193
BsiEI CGRYCG 5 cut(s) 193, 206, 350, 449, 520
BsiHKAI GWGCWC 4 cut(s) 46, 127, 455, 504
BsiSI CCGG 6 cut(s) 36, 53, 341, 488, 516, 581
BslFI GGGAC 2 cut(s) 329, 498
BslI CCNNNNNNNGG 3 cut(s) 150, 285, 432
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 329, 498
BsnI GGCC 3 cut(s) 35, 56, 263
Bsp1286I GDGCHC 4 cut(s) 46, 127, 455, 504
Bsp143I GATC 8 cut(s) 190, 203, 446, 474, 511, 528, 573, 588
Bsp19I CCATGG 1 cut(s) 232
Bsp68I TCGCGA 1 cut(s) 445
BspACI CCGC 8 cut(s) 47, 250, 256, 279, 426, 497, 532, 537
BspANI GGCC 3 cut(s) 35, 56, 263
BspDI ATCGAT 2 cut(s) 80, 193
BspFNI CGCG 3 cut(s) 428, 445, 534
BspLI GGNNCC 3 cut(s) 133, 424, 486
BspPI GGATC 4 cut(s) 469, 506, 523, 581
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 106, 232, 431
BssMI GATC 8 cut(s) 190, 203, 446, 474, 511, 528, 573, 588
BssNI GRCGYC 1 cut(s) 321
BssT1I CCWWGG 2 cut(s) 106, 232
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 342
BstDSI CCRYGG 2 cut(s) 232, 431
BstF5I GGATG 4 cut(s) 10, 242, 252, 373
BstFNI CGCG 3 cut(s) 428, 445, 534
BstHHI GCGC 2 cut(s) 430, 536
BstKTI GATC 8 cut(s) 193, 206, 449, 477, 514, 531, 576, 591
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 8 cut(s) 190, 203, 446, 474, 511, 528, 573, 588
BstMCI CGRYCG 5 cut(s) 193, 206, 350, 449, 520
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstSCI CCNGG 4 cut(s) 35, 487, 514, 580
BstUI CGCG 3 cut(s) 428, 445, 534
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 528, 588
BstXI CCANNNNNNTGG 2 cut(s) 239, 414
BstYI RGATCY 2 cut(s) 528, 588
Bsu15I ATCGAT 2 cut(s) 80, 193
BsuRI GGCC 3 cut(s) 35, 56, 263
BsuTUI ATCGAT 2 cut(s) 80, 193
BtgI CCRYGG 2 cut(s) 232, 431
BtsCI GGATG 4 cut(s) 10, 242, 252, 373
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 288, 512
BtuMI TCGCGA 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 2 cut(s) 430, 536
Cfr10I RCCGGY 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 485, 578
ClaI ATCGAT 2 cut(s) 80, 193
CpoI CGGWCCG 1 cut(s) 578
CseI GACGC 1 cut(s) 204
Csp6I GTAC 2 cut(s) 64, 88
CspCI CAANNNNNGTGG 2 cut(s) 420, 455
CspI CGGWCCG 1 cut(s) 578
CviAII CATG 2 cut(s) 128, 233
CviQI GTAC 2 cut(s) 64, 88
DpnI GATC 8 cut(s) 192, 205, 448, 476, 513, 530, 575, 590
DpnII GATC 8 cut(s) 190, 203, 446, 474, 511, 528, 573, 588
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 2 cut(s) 36, 512
Ecl136II GAGCTC 2 cut(s) 44, 453
Eco130I CCWWGG 2 cut(s) 106, 232
Eco24I GRGCYC 2 cut(s) 46, 455
Eco47I GGWCC 2 cut(s) 485, 578
Eco53kI GAGCTC 2 cut(s) 44, 453
Eco72I CACGTG 1 cut(s) 18
EcoICRI GAGCTC 2 cut(s) 44, 453
EcoT14I CCWWGG 2 cut(s) 106, 232
EcoT38I GRGCYC 2 cut(s) 46, 455
ErhI CCWWGG 2 cut(s) 106, 232
FaeI CATG 2 cut(s) 131, 236
FaiI YATR 3 cut(s) 129, 234, 610
FaqI GGGAC 2 cut(s) 329, 498
FatI CATG 2 cut(s) 127, 232
Fnu4HI GCNGC 4 cut(s) 279, 296, 426, 537
FokI GGATG 4 cut(s) 17, 239, 249, 380
FriOI GRGCYC 2 cut(s) 46, 455
Fsp4HI GCNGC 4 cut(s) 279, 296, 426, 537
FspBI CTAG 2 cut(s) 396, 459
GlaI GCGC 2 cut(s) 429, 535
GluI GCNGC 4 cut(s) 279, 296, 426, 537
HaeIII GGCC 3 cut(s) 35, 56, 263
HapII CCGG 6 cut(s) 36, 53, 341, 488, 516, 581
HgaI GACGC 1 cut(s) 204
HhaI GCGC 2 cut(s) 430, 536
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 2 cut(s) 131, 236
Hin6I GCGC 2 cut(s) 428, 534
HinP1I GCGC 2 cut(s) 428, 534
HinfI GANTC 2 cut(s) 328, 465
HpaII CCGG 6 cut(s) 36, 53, 341, 488, 516, 581
HphI GGTGA 1 cut(s) 572
Hpy188I TCNGA 4 cut(s) 97, 333, 474, 479
Hpy188III TCNNGA 2 cut(s) 325, 444
Hpy99I CGWCG 3 cut(s) 141, 323, 377
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 3 cut(s) 17, 321, 594
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpySE526I ACGT 3 cut(s) 17, 321, 594
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 2 cut(s) 131, 236
HspAI GCGC 2 cut(s) 428, 534
KroI GCCGGC 1 cut(s) 340
KroNI GCCGGC 1 cut(s) 342
Kzo9I GATC 8 cut(s) 190, 203, 446, 474, 511, 528, 573, 588
LmnI GCTCC 4 cut(s) 49, 137, 422, 499
LpnPI CCDG 9 cut(s) 49, 66, 293, 354, 501, 518, 529, 587, 594
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 2 cut(s) 174, 261
MaeI CTAG 2 cut(s) 396, 459
MaeII ACGT 3 cut(s) 17, 321, 594
MaeIII GTNAC 1 cut(s) 560
MalI GATC 8 cut(s) 192, 205, 448, 476, 513, 530, 575, 590
MboI GATC 8 cut(s) 190, 203, 446, 474, 511, 528, 573, 588
MboII GAAGA 2 cut(s) 237, 301
MflI RGATCY 2 cut(s) 528, 588
MhlI GDGCHC 4 cut(s) 46, 127, 455, 504
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 340
MslI CAYNNNNRTG 2 cut(s) 237, 412
MspI CCGG 6 cut(s) 36, 53, 341, 488, 516, 581
MspR9I CCNGG 4 cut(s) 37, 489, 516, 582
MvnI CGCG 3 cut(s) 428, 445, 534
MwoI GCNNNNNNNGC 1 cut(s) 41
NaeI GCCGGC 1 cut(s) 342
NciI CCSGG 4 cut(s) 37, 489, 516, 582
NcoI CCATGG 1 cut(s) 232
NdeII GATC 8 cut(s) 190, 203, 446, 474, 511, 528, 573, 588
NgoMIV GCCGGC 1 cut(s) 340
NlaIII CATG 2 cut(s) 131, 236
NlaIV GGNNCC 3 cut(s) 133, 424, 486
NmeAIII GCCGAG 2 cut(s) 149, 434
NmuCI GTSAC 1 cut(s) 560
NruI TCGCGA 1 cut(s) 445
PcsI WCGNNNNNNNCGW 3 cut(s) 199, 212, 582
PdiI GCCGGC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 4 cut(s) 280, 297, 427, 538
Ple19I CGATCG 3 cut(s) 193, 206, 449
PleI GAGTC 1 cut(s) 473
PmaCI CACGTG 1 cut(s) 18
PmlI CACGTG 1 cut(s) 18
PpsI GAGTC 1 cut(s) 473
Ppu21I YACGTR 1 cut(s) 18
Psp124BI GAGCTC 2 cut(s) 46, 455
PspCI CACGTG 1 cut(s) 18
PspN4I GGNNCC 3 cut(s) 133, 424, 486
PspPI GGNCC 2 cut(s) 485, 578
PsuI RGATCY 2 cut(s) 528, 588
PsyI GACNNNGTC 1 cut(s) 320
PvuI CGATCG 3 cut(s) 193, 206, 449
RruI TCGCGA 1 cut(s) 445
RsaI GTAC 2 cut(s) 65, 89
RsaNI GTAC 2 cut(s) 64, 88
RseI CAYNNNNRTG 2 cut(s) 237, 412
Rsr2I CGGWCCG 1 cut(s) 578
RsrII CGGWCCG 1 cut(s) 578
SacI GAGCTC 2 cut(s) 46, 455
SatI GCNGC 4 cut(s) 279, 296, 426, 537
Sau3AI GATC 8 cut(s) 190, 203, 446, 474, 511, 528, 573, 588
Sau96I GGNCC 2 cut(s) 485, 578
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 4 cut(s) 37, 489, 516, 582
SduI GDGCHC 4 cut(s) 46, 127, 455, 504
SfaNI GCATC 2 cut(s) 174, 261
SinI GGWCC 2 cut(s) 485, 578
SmiMI CAYNNNNRTG 2 cut(s) 237, 412
SsiI CCGC 8 cut(s) 47, 250, 256, 279, 426, 497, 532, 537
SspMI CTAG 2 cut(s) 396, 459
SstI GAGCTC 2 cut(s) 46, 455
StyD4I CCNGG 4 cut(s) 35, 487, 514, 580
StyI CCWWGG 2 cut(s) 106, 232
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 3 cut(s) 20, 324, 597
TaqI TCGA 9 cut(s) 80, 189, 193, 202, 346, 356, 449, 463, 520
TaqII GACCGA 2 cut(s) 364, 566
TatI WGTACW 1 cut(s) 87
TauI GCSGC 3 cut(s) 281, 428, 539
TfiI GAWTC 1 cut(s) 328
TscAI CASTG 2 cut(s) 288, 512
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 560
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 2 cut(s) 288, 512
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 485, 578
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
XspI CTAG 2 cut(s) 396, 459
ZraI GACGTC 1 cut(s) 322
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.