RLG00000017617

Peptidase, trypsin-like serine and cysteine proteases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011623
Physical Location & Seq
Reverse (-)
19205748 .. 19208061
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017617

Sequence Viewer

Length: 1038 bp
ATGGATGTGGTGCTTTCCCAGATCCGGTTTGCCCGTAGTGCTTCTCGTCAGAGTGGGGAAGAGGCTGCGTTCCCGTTCTGGTTTGGGACGGCGTCGAGATTCCGACCAAGCCTGGCTCAACTGAAATCGGGTTTAGGGATGGCGACGAGGTGGTTGGGCGAGGAACTCGAGTTAGACCATCGTGGTGGTGGGGAGCTGTTGACAAGGGGTTTGTTGGGGTTAGGCTCGGCTAGTCAGAGCCCCTCCGATCTGAGAGGGGACTGGGTGTGGCGGAGCAATTGCGCAGTCCAGGGTCCAACCAAGATCCGCGTCATGGAGGGCGGCGCCGTTGAAGGTGTTTGGCGGCGAGGTGACGAGGGTGGGATCGGTCTGGGCGAGATCCGAGTTTCAGCTGGTGGTATGGGTGGCAGAGGGCGACTTCGAGTTGGTGGGGCTGGGATACCCTTTCTGCGACGAAGGACAGTGGAGCAGAGGCCGAGAGTCCTCTTTTCCGCCGACGCCCCTCAACTCGAATCCCTGGACTTGGATACCCCGTCGTTTGGACACATTTCCTCCGTCAGAAAGCTCAGTTTCCCTTCCAAGCAGCCGGGCTTAAAAGTCAAGCTACTCGGCTCGTCCAATGGTTTGGTGTTTGTTGCATTTGATGATATCAATATCTATATCTGGAACCCGTCAATCCGCTTCTTCAAGGAACTGCCCGTCCCCTGTTTTTCCGCAGATCATACGCAGCTGATCTATTATGGTGCTGGCTATTTGTCTACCACCGACGACTACAAAGTTTTCGCAGCCTCATTTGACAGGAATGAACGGACAGAAGAGATGGAGATATTCTCCTTGAGAGCTCACGTTTGGAAAACCATCCCACACCCTGGCCATTACAGTCCCTTCTTTATTCGTCAGGGGACTCTTTTGAATGAGGCACTTCATTGGTTACACTCACATCCCGGTGAAATCCTTGCTTTTGATTTAGCACATGAGGAGTTCAGGACAATGCGTCTGCCATGTAACGGTGTAATCTTCGACTATGTTGGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.3

Weight (kDa)

8.43

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 183 - 337 5e-12 F-box associated beta propeller domain
FBA_1 PF07734 187 - 337 2.6e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 869
AccI GTMKAC 1 cut(s) 758
AccII CGCG 1 cut(s) 309
AciI CCGC 7 cut(s) 271, 307, 321, 343, 492, 679, 714
AclWI GGATC 4 cut(s) 16, 298, 371, 373
AcoI YGGCCR 1 cut(s) 871
AcyI GRCGYC 3 cut(s) 92, 324, 498
AfiI CCNNNNNNNGG 6 cut(s) 24, 313, 523, 539, 869, 1007
AgsI TTSAA 3 cut(s) 332, 688, 913
AhdI GACNNNNNGTC 1 cut(s) 993
AjnI CCWGG 4 cut(s) 111, 288, 516, 868
AloI GAACNNNNNNTCC 2 cut(s) 684, 716
AluBI AGCT 6 cut(s) 196, 392, 565, 604, 730, 842
AluI AGCT 6 cut(s) 196, 392, 565, 604, 730, 842
Alw21I GWGCWC 1 cut(s) 844
AlwI GGATC 4 cut(s) 16, 298, 371, 373
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 473, 871
ApeKI GCWGC 4 cut(s) 65, 583, 727, 785
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
AspLEI GCGC 2 cut(s) 284, 326
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 2 cut(s) 588, 945
AsuHPI GGTGA 2 cut(s) 362, 959
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 873
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 2 cut(s) 242, 844
Bbv12I GWGCWC 1 cut(s) 844
BbvI GCAGC 4 cut(s) 52, 595, 739, 797
BccI CCATC 4 cut(s) 133, 186, 814, 866
BceAI ACGGC 2 cut(s) 105, 311
BciT130I CCWGG 4 cut(s) 113, 290, 518, 870
BciVI GTATCC 2 cut(s) 432, 520
BcnI CCSGG 2 cut(s) 588, 945
BfaI CTAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 327
BfuI GTATCC 2 cut(s) 432, 520
BisI GCNGC 6 cut(s) 66, 322, 344, 584, 728, 786
BlsI GCNGC 6 cut(s) 67, 323, 345, 585, 729, 787
Bme1390I CCNGG 6 cut(s) 113, 290, 518, 588, 870, 945
Bme18I GGWCC 1 cut(s) 293
BmeRI GACNNNNNGTC 1 cut(s) 993
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 3 cut(s) 294, 325, 668
BmrFI CCNGG 6 cut(s) 113, 290, 518, 588, 870, 945
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 815, 847
BpuEI CTTGAG 1 cut(s) 856
BpuMI CCSGG 2 cut(s) 588, 945
BsaHI GRCGYC 3 cut(s) 92, 324, 498
BsaJI CCNNGG 3 cut(s) 289, 516, 868
BsaWI WCCGGW 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 6 cut(s) 24, 313, 523, 539, 869, 1007
Bse1I ACTGG 1 cut(s) 266
BseBI CCWGG 4 cut(s) 113, 290, 518, 870
BseDI CCNNGG 3 cut(s) 289, 516, 868
BseGI GGATG 4 cut(s) 10, 144, 858, 940
BseLI CCNNNNNNNGG 6 cut(s) 24, 313, 523, 539, 869, 1007
BseMII CTCAG 2 cut(s) 242, 580
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 992
BseXI GCAGC 4 cut(s) 52, 595, 739, 797
BseYI CCCAGC 1 cut(s) 434
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 475, 873
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 844
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 3 cut(s) 25, 587, 945
BslFI GGGAC 5 cut(s) 100, 272, 686, 867, 916
BslI CCNNNNNNNGG 6 cut(s) 24, 313, 523, 539, 869, 1007
BsmFI GGGAC 5 cut(s) 100, 272, 686, 867, 916
BsnI GGCC 2 cut(s) 475, 873
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 242, 844
Bsp143I GATC 7 cut(s) 21, 247, 303, 363, 378, 718, 732
BspACI CCGC 7 cut(s) 271, 307, 321, 343, 492, 679, 714
BspANI GGCC 2 cut(s) 475, 873
BspCNI CTCAG 2 cut(s) 243, 579
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 294, 325, 668
BspPI GGATC 4 cut(s) 16, 298, 371, 373
BspT107I GGYRCC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 289, 516, 868
BssMI GATC 7 cut(s) 21, 247, 303, 363, 378, 718, 732
BssNI GRCGYC 3 cut(s) 92, 324, 498
Bst2UI CCWGG 4 cut(s) 113, 290, 518, 870
Bst4CI ACNGT 3 cut(s) 463, 881, 1010
Bst6I CTCTTC 2 cut(s) 54, 810
BstACI GRCGYC 3 cut(s) 92, 324, 498
BstC8I GCNNGC 1 cut(s) 748
BstDEI CTNAG 2 cut(s) 251, 566
BstF5I GGATG 4 cut(s) 10, 144, 858, 940
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 2 cut(s) 284, 326
BstKTI GATC 7 cut(s) 24, 250, 306, 366, 381, 721, 735
BstMBI GATC 7 cut(s) 21, 247, 303, 363, 378, 718, 732
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 4 cut(s) 113, 290, 518, 870
BstSCI CCNGG 6 cut(s) 111, 288, 516, 586, 868, 943
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 4 cut(s) 52, 595, 739, 797
BstX2I RGATCY 3 cut(s) 21, 303, 378
BstXI CCANNNNNNTGG 2 cut(s) 185, 625
BstYI RGATCY 3 cut(s) 21, 303, 378
BsuI GTATCC 2 cut(s) 432, 520
BsuRI GGCC 2 cut(s) 475, 873
BtsCI GGATG 4 cut(s) 10, 144, 858, 940
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 748
CfoI GCGC 2 cut(s) 284, 326
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 4 cut(s) 81, 298, 506, 983
CviAII CATG 3 cut(s) 313, 974, 1002
DdeI CTNAG 2 cut(s) 251, 566
DinI GGCGCC 1 cut(s) 325
DpnI GATC 7 cut(s) 23, 249, 305, 365, 380, 720, 734
DpnII GATC 7 cut(s) 21, 247, 303, 363, 378, 718, 732
DriI GACNNNNNGTC 1 cut(s) 993
EaeI YGGCCR 1 cut(s) 871
Eam1104I CTCTTC 2 cut(s) 54, 810
Eam1105I GACNNNNNGTC 1 cut(s) 993
EarI CTCTTC 2 cut(s) 54, 810
EciI GGCGGA 2 cut(s) 286, 481
Ecl136II GAGCTC 1 cut(s) 842
Eco24I GRGCYC 2 cut(s) 242, 844
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 842
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 842
EcoRII CCWGG 4 cut(s) 111, 288, 516, 868
EcoRV GATATC 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 242, 844
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
FaeI CATG 3 cut(s) 316, 977, 1005
FaiI YATR 8 cut(s) 314, 401, 660, 723, 741, 975, 1003, 1026
FaqI GGGAC 5 cut(s) 100, 272, 686, 867, 916
FatI CATG 3 cut(s) 312, 973, 1001
FblI GTMKAC 1 cut(s) 758
Fnu4HI GCNGC 6 cut(s) 66, 322, 344, 584, 728, 786
FokI GGATG 4 cut(s) 17, 151, 845, 927
FriOI GRGCYC 2 cut(s) 242, 844
Fsp4HI GCNGC 6 cut(s) 66, 322, 344, 584, 728, 786
FspBI CTAG 1 cut(s) 231
FspI TGCGCA 1 cut(s) 283
GlaI GCGC 2 cut(s) 283, 325
GluI GCNGC 6 cut(s) 66, 322, 344, 584, 728, 786
GsaI CCCAGC 1 cut(s) 438
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 2 cut(s) 475, 873
HapII CCGG 3 cut(s) 25, 587, 945
HgaI GACGC 4 cut(s) 81, 298, 506, 983
HhaI GCGC 2 cut(s) 284, 326
Hin1I GRCGYC 3 cut(s) 92, 324, 498
Hin1II CATG 3 cut(s) 316, 977, 1005
Hin6I GCGC 2 cut(s) 282, 324
HinP1I GCGC 2 cut(s) 282, 324
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HinfI GANTC 4 cut(s) 99, 480, 512, 904
HpaII CCGG 3 cut(s) 25, 587, 945
HphI GGTGA 2 cut(s) 362, 959
Hpy166II GTNNAC 2 cut(s) 201, 759
Hpy188I TCNGA 8 cut(s) 51, 104, 237, 247, 252, 383, 560, 1037
Hpy188III TCNNGA 3 cut(s) 96, 664, 985
Hpy8I GTNNAC 2 cut(s) 201, 759
Hpy99I CGWCG 6 cut(s) 97, 148, 456, 500, 538, 770
HpyAV CCTTC 4 cut(s) 326, 450, 585, 895
HpyCH4III ACNGT 3 cut(s) 463, 881, 1010
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 1 cut(s) 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 251, 566
HpySE526I ACGT 1 cut(s) 846
Hsp92I GRCGYC 3 cut(s) 92, 324, 498
Hsp92II CATG 3 cut(s) 316, 977, 1005
HspAI GCGC 2 cut(s) 282, 324
KasI GGCGCC 1 cut(s) 323
Kzo9I GATC 7 cut(s) 21, 247, 303, 363, 378, 718, 732
LmnI GCTCC 3 cut(s) 193, 273, 466
Lsp1109I GCAGC 4 cut(s) 52, 595, 739, 797
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 3 cut(s) 350, 930, 1004
MalI GATC 7 cut(s) 23, 249, 305, 365, 380, 720, 734
MboI GATC 7 cut(s) 21, 247, 303, 363, 378, 718, 732
MboII GAAGA 4 cut(s) 71, 676, 827, 1009
MfeI CAATTG 1 cut(s) 277
MflI RGATCY 3 cut(s) 21, 303, 378
MhlI GDGCHC 2 cut(s) 242, 844
MlsI TGGCCA 1 cut(s) 873
MluCI AATT 1 cut(s) 277
MluNI TGGCCA 1 cut(s) 873
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 2 cut(s) 489, 898
MmeI TCCRAC 2 cut(s) 127, 320
Mox20I TGGCCA 1 cut(s) 873
MscI TGGCCA 1 cut(s) 873
MseI TTAA 1 cut(s) 593
MslI CAYNNNNRTG 2 cut(s) 183, 945
Msp20I TGGCCA 1 cut(s) 873
MspA1I CMGCKG 2 cut(s) 392, 730
MspI CCGG 3 cut(s) 25, 587, 945
MspR9I CCNGG 6 cut(s) 113, 290, 518, 588, 870, 945
MunI CAATTG 1 cut(s) 277
MvaI CCWGG 4 cut(s) 113, 290, 518, 870
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 38
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 588, 945
NdeII GATC 7 cut(s) 21, 247, 303, 363, 378, 718, 732
NlaIII CATG 3 cut(s) 316, 977, 1005
NlaIV GGNNCC 3 cut(s) 294, 325, 668
NmeAIII GCCGAG 3 cut(s) 206, 501, 588
NmuCI GTSAC 1 cut(s) 350
NsbI TGCGCA 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 2 cut(s) 99, 512
PflFI GACNNNGTC 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 869
PkrI GCNGC 6 cut(s) 67, 323, 345, 585, 729, 787
PleI GAGTC 2 cut(s) 488, 898
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 2 cut(s) 488, 898
Psp124BI GAGCTC 1 cut(s) 844
Psp6I CCWGG 4 cut(s) 111, 288, 516, 868
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 4 cut(s) 111, 288, 516, 868
PspN4I GGNNCC 3 cut(s) 294, 325, 668
PspPI GGNCC 1 cut(s) 293
PspXI VCTCGAGB 1 cut(s) 167
PsuI RGATCY 3 cut(s) 21, 303, 378
PsyI GACNNNGTC 1 cut(s) 91
PvuII CAGCTG 2 cut(s) 392, 730
RseI CAYNNNNRTG 2 cut(s) 183, 945
SacI GAGCTC 1 cut(s) 844
SaqAI TTAA 1 cut(s) 593
SatI GCNGC 6 cut(s) 66, 322, 344, 584, 728, 786
Sau3AI GATC 7 cut(s) 21, 247, 303, 363, 378, 718, 732
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 2 cut(s) 489, 898
ScrFI CCNGG 6 cut(s) 113, 290, 518, 588, 870, 945
SduI GDGCHC 2 cut(s) 242, 844
SfoI GGCGCC 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 183, 945
SmlI CTYRAG 2 cut(s) 167, 835
SmoI CTYRAG 2 cut(s) 167, 835
Sse9I AATT 1 cut(s) 277
SsiI CCGC 7 cut(s) 271, 307, 321, 343, 492, 679, 714
SspDI GGCGCC 1 cut(s) 323
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 1 cut(s) 844
StyD4I CCNGG 6 cut(s) 111, 288, 516, 586, 868, 943
TaaI ACNGT 3 cut(s) 463, 881, 1010
TaiI ACGT 1 cut(s) 849
TaqI TCGA 5 cut(s) 95, 168, 421, 510, 1020
TaqII GACCGA 1 cut(s) 356
TasI AATT 1 cut(s) 277
TauI GCSGC 2 cut(s) 324, 346
TfiI GAWTC 2 cut(s) 99, 512
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 4 cut(s) 65, 583, 727, 785
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 819, 914
TspGWI ACGGA 2 cut(s) 544, 823
TspRI CASTG 1 cut(s) 468
Tth111I GACNNNGTC 1 cut(s) 91
Van91I CCANNNNNTGG 1 cut(s) 869
VpaK11BI GGWCC 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 758
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.