Rh6BG525300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011623
Physical Location & Seq
Reverse (-)
71698140 .. 71698394
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG525300.1

Sequence Viewer

Length: 255 bp
ATGGCGGCGAGGAGGTTGGGTGAGGAACCTGAGTTCGCCCATCGTGGTGGCGTGGAGCTATTAGCATGGGGCTTGTCGGGTTCAAGCTCGGCTAGTCAGAGCCCCTCCAATCTGAGAGGGAATTGGTTATGGCGGAGCATTTTCACATTCCTGTTTCGTAACAGGATCCGGGCCAAGGAGGGCGGCGCCGGTGAAAGTGTTTGGCGTCGTGGTGACGAGGGTGGGATCGGCCTTCTCCGGTGGAATTCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.33

Weight (kDa)

11.04

Isoelectric Point (pI)

73.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AciI CCGC 3 cut(s) 5, 133, 183
AclWI GGATC 3 cut(s) 160, 173, 233
AcsI RAATTY 1 cut(s) 244
AcyI GRCGYC 2 cut(s) 186, 205
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 84
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 2 cut(s) 58, 87
AluI AGCT 2 cut(s) 58, 87
AlwI GGATC 3 cut(s) 160, 173, 233
AoxI GGCC 2 cut(s) 171, 229
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 3 cut(s) 32, 203, 224
BamHI GGATCC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 104
BccI CCATC 1 cut(s) 48
BcnI CCSGG 1 cut(s) 170
BfaI CTAG 2 cut(s) 93, 253
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 2 cut(s) 6, 184
BlsI GCNGC 2 cut(s) 7, 185
Bme1390I CCNGG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 3 cut(s) 27, 167, 187
BmrFI CCNGG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 170
BsaHI GRCGYC 2 cut(s) 186, 205
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 2 cut(s) 21, 104
BseRI GAGGAG 1 cut(s) 25
BshFI GGCC 2 cut(s) 173, 231
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 3 cut(s) 169, 189, 238
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 2 cut(s) 173, 231
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 165, 225
BspACI CCGC 3 cut(s) 5, 133, 183
BspANI GGCC 2 cut(s) 173, 231
BspCNI CTCAG 2 cut(s) 22, 105
BspLI GGNNCC 3 cut(s) 27, 167, 187
BspPI GGATC 3 cut(s) 160, 173, 233
BspT107I GGYRCC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 2 cut(s) 165, 225
BssNI GRCGYC 2 cut(s) 186, 205
BssT1I CCWWGG 1 cut(s) 174
BstACI GRCGYC 2 cut(s) 186, 205
BstDEI CTNAG 2 cut(s) 30, 113
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 2 cut(s) 168, 228
BstMBI GATC 2 cut(s) 165, 225
BstSCI CCNGG 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 173, 231
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 171
CseI GACGC 1 cut(s) 194
CviAII CATG 1 cut(s) 66
CviJI RGCY 7 cut(s) 58, 72, 87, 92, 102, 173, 231
CviKI_1 RGCY 7 cut(s) 58, 72, 87, 92, 102, 173, 231
DdeI CTNAG 2 cut(s) 30, 113
DinI GGCGCC 1 cut(s) 187
DpnI GATC 2 cut(s) 167, 227
DpnII GATC 2 cut(s) 165, 225
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 104
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 69
FaiI YATR 2 cut(s) 67, 130
FatI CATG 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 6, 184
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 2 cut(s) 6, 184
FspBI CTAG 2 cut(s) 93, 253
GlaI GCGC 1 cut(s) 187
GluI GCNGC 2 cut(s) 6, 184
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 2 cut(s) 173, 231
HapII CCGG 3 cut(s) 169, 189, 238
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 2 cut(s) 186, 205
Hin1II CATG 1 cut(s) 69
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HpaII CCGG 3 cut(s) 169, 189, 238
HphI GGTGA 3 cut(s) 32, 203, 224
Hpy188I TCNGA 3 cut(s) 99, 114, 250
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 30, 113
Hsp92I GRCGYC 2 cut(s) 186, 205
Hsp92II CATG 1 cut(s) 69
HspAI GCGC 1 cut(s) 186
KasI GGCGCC 1 cut(s) 185
Kzo9I GATC 2 cut(s) 165, 225
LmnI GCTCC 2 cut(s) 55, 135
LpnPI CCDG 6 cut(s) 42, 148, 164, 182, 202, 251
MaeI CTAG 2 cut(s) 93, 253
MaeIII GTNAC 2 cut(s) 158, 212
MalI GATC 2 cut(s) 167, 227
MboI GATC 2 cut(s) 165, 225
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 2 cut(s) 121, 244
Mly113I GGCGCC 1 cut(s) 186
MnlI CCTC 7 cut(s) 3, 6, 16, 110, 115, 172, 211
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 3 cut(s) 169, 189, 238
MspR9I CCNGG 1 cut(s) 170
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 170
NdeII GATC 2 cut(s) 165, 225
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 3 cut(s) 27, 167, 187
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 7, 185
PluTI GGCGCC 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 27, 167, 187
PspPI GGNCC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 45
SatI GCNGC 2 cut(s) 6, 184
Sau3AI GATC 2 cut(s) 165, 225
Sau96I GGNCC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 104
SetI ASST 4 cut(s) 17, 31, 60, 89
SfoI GGCGCC 1 cut(s) 187
SgrAI CRCCGGYG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 121, 244
SsiI CCGC 3 cut(s) 5, 133, 183
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 2 cut(s) 93, 253
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 174
TasI AATT 2 cut(s) 121, 244
TauI GCSGC 2 cut(s) 8, 186
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
XapI RAATTY 1 cut(s) 244
XspI CTAG 2 cut(s) 93, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.