Rh1AG247100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011623
Physical Location & Seq
Forward (+)
46078373 .. 46078576
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG247100.1

Sequence Viewer

Length: 204 bp
ATGGCGGCCAGGGCGCTTTCAAATGGGCCAGGATGTTGGGACGGAGCCGAGATTTTGGCCAAGCCAGGCTCGATTGATATCAAGTTTTGGGATGCGGCGAGGAGGTTGGGTGAGGAACTCGAGTTCGCCCATCGTGGTGGCGTAGAGCTCCTGGCATGGGCTTGTCGGGTTCAGGCTTGGCTAGTCAGAGCCCCTCCGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.32

Weight (kDa)

6.54

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 95
AcoI YGGCCR 2 cut(s) 6, 57
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 4 cut(s) 8, 28, 64, 150
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 3 cut(s) 6, 26, 57
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 2 cut(s) 150, 193
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 4 cut(s) 10, 30, 66, 152
BfaI CTAG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 17
BisI GCNGC 2 cut(s) 6, 96
BlsI GCNGC 2 cut(s) 7, 97
Bme1390I CCNGG 4 cut(s) 10, 30, 66, 152
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 4 cut(s) 10, 30, 66, 152
BmsI GCATC 1 cut(s) 82
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 4 cut(s) 10, 30, 66, 152
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 38, 97
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 115
BshFI GGCC 3 cut(s) 8, 28, 59
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 3 cut(s) 8, 28, 59
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 150, 193
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 2 cut(s) 5, 95
BspANI GGCC 3 cut(s) 8, 28, 59
BspLI GGNNCC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 198
Bst2UI CCWGG 4 cut(s) 10, 30, 66, 152
BstF5I GGATG 2 cut(s) 38, 97
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 4 cut(s) 10, 30, 66, 152
BstSCI CCNGG 4 cut(s) 8, 28, 64, 150
BstXI CCANNNNNNTGG 2 cut(s) 36, 137
BsuRI GGCC 3 cut(s) 8, 28, 59
BtsCI GGATG 2 cut(s) 38, 97
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 26
CviAII CATG 1 cut(s) 156
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
EaeI YGGCCR 2 cut(s) 6, 57
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 150, 193
Eco32I GATATC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 4 cut(s) 8, 28, 64, 150
EcoRV GATATC 1 cut(s) 79
EcoT38I GRGCYC 2 cut(s) 150, 193
FaeI CATG 1 cut(s) 159
FaiI YATR 1 cut(s) 157
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 6, 96
FokI GGATG 2 cut(s) 45, 104
FriOI GRGCYC 2 cut(s) 150, 193
Fsp4HI GCNGC 2 cut(s) 6, 96
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 15
GluI GCNGC 2 cut(s) 6, 96
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 3 cut(s) 8, 28, 59
HhaI GCGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 159
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 3 cut(s) 188, 198, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 1 cut(s) 159
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 44, 153
LpnPI CCDG 8 cut(s) 15, 22, 42, 51, 78, 137, 158, 164
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 182
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 150, 193
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MnlI CCTC 4 cut(s) 93, 96, 106, 204
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 4 cut(s) 10, 30, 66, 152
MvaI CCWGG 4 cut(s) 10, 30, 66, 152
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 119
PkrI GCNGC 2 cut(s) 7, 97
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 4 cut(s) 8, 28, 64, 150
PspGI CCWGG 4 cut(s) 8, 28, 64, 150
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 26
PspXI VCTCGAGB 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 150
SatI GCNGC 2 cut(s) 6, 96
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 4 cut(s) 10, 30, 66, 152
SduI GDGCHC 2 cut(s) 150, 193
SetI ASST 2 cut(s) 107, 150
SfaNI GCATC 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SsiI CCGC 2 cut(s) 5, 95
SspMI CTAG 1 cut(s) 182
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 8, 28, 64, 150
TaqI TCGA 2 cut(s) 71, 120
TauI GCSGC 2 cut(s) 8, 98
TspGWI ACGGA 1 cut(s) 57
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.