Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011623

Physical Location & Seq

Genomic Coordinates Forward (+)

11913509 .. 11913784

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG131900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACAACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAAATCCAATGGTCAAGAACTCGTCAAGTGGAGGTGGAAGCCTAAGCACTGTGATCTGGCGAATCTCCTGCCCTAACGGTGAGGGGACTGGGGTTGAGCGGTTGGAGGCGGCTCGGGGGTGCCATGGTCGTGGCGGCGCGGTCGAGCTCTACTTGGACGAACCCGATCTAGGTTGGTTTTCGTGGATCCGATCTGGAGAAGGCGTTGTTTGGGTGGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

9.66

Weight (kDa)

7.84

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011623)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008557 RLG00000014754 RLG00000017617
rosa_multiflora	Rmu_sc0002748.1_g000007 Rmu_sc0009650.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252120 Rroxscaffold_6G00391710
rosa_samantha	Rh1AG247100 Rh1DG019000 Rh2AG131900 Rh2CG259400 Rh5BG386400 Rh5DG049100 Rh5DG273000 Rh6BG525300 Rh6DG516800 Rh7AG182500 Rh7AG466100 Rh7CG192000 Rh7DG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	151
AccII	CGCG	1 cut(s)	191
AciI	CCGC	4 cut(s)	151, 161, 186, 191
AclWI	GGATC	2 cut(s)	232, 245
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	232, 245
Ama87I	CYCGRG	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BfaI	CTAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	2 cut(s)	162, 187
BlsI	GCNGC	2 cut(s)	163, 188
BmeT110I	CYCGRG	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	173, 239
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	5 cut(s)	20, 105, 217, 237, 242
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	4 cut(s)	151, 161, 186, 191
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	173, 239
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	232, 245
BspT107I	GGYRCC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	5 cut(s)	20, 105, 217, 237, 242
BssT1I	CCWWGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	103, 131
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	5 cut(s)	23, 108, 220, 240, 245
BstMBI	GATC	5 cut(s)	20, 105, 217, 237, 242
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstUI	CGCG	1 cut(s)	191
BstX2I	RGATCY	2 cut(s)	20, 237
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	2 cut(s)	20, 237
BtgI	CCRYGG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	99
BveI	ACCTGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	191
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	4 cut(s)	32, 93, 164, 199
CviKI_1	RGCY	4 cut(s)	32, 93, 164, 199
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	5 cut(s)	22, 107, 219, 239, 244
DpnII	GATC	5 cut(s)	20, 105, 217, 237, 242
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	179
FaiI	YATR	1 cut(s)	177
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	162, 187
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	162, 187
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	2 cut(s)	162, 187
GsuI	CTGGAG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	1 cut(s)	114
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	67, 246
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	103, 131
HpyCH4V	TGCA	2 cut(s)	14, 41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	5 cut(s)	20, 105, 217, 237, 242
LpnPI	CCDG	7 cut(s)	18, 24, 60, 94, 126, 133, 231
MaeI	CTAG	1 cut(s)	221
MalI	GATC	5 cut(s)	22, 107, 219, 239, 244
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	5 cut(s)	20, 105, 217, 237, 242
MboII	GAAGA	1 cut(s)	15
MflI	RGATCY	2 cut(s)	20, 237
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	77, 127, 151
MslI	CAYNNNNRTG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NcoI	CCATGG	1 cut(s)	175
NdeII	GATC	5 cut(s)	20, 105, 217, 237, 242
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	173, 239
PaqCI	CACCTGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	163, 188
Psp124BI	GAGCTC	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	173, 239
PsuI	RGATCY	2 cut(s)	20, 237
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	201
SatI	GCNGC	2 cut(s)	162, 187
Sau3AI	GATC	5 cut(s)	20, 105, 217, 237, 242
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	4 cut(s)	13, 88, 201, 226
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	4 cut(s)	151, 161, 186, 191
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	103, 131
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	36
TauI	GCSGC	2 cut(s)	164, 189
TfiI	GAWTC	1 cut(s)	114
TscAI	CASTG	1 cut(s)	106
TspRI	CASTG	1 cut(s)	106
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.