Rh2CG259400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011623
Physical Location & Seq
Reverse (-)
27788111 .. 27788332
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG259400.1

Sequence Viewer

Length: 222 bp
ATGGACCAGGTTGTTGGGACGGCGCTGAGGTGGTTGGGCGAGGAACTCGTGTTCGCCCATCGTGGTGGCGTGGATCTGCTGGCATGGGGCTGGTCGGGTTCAGGCTTGGCTAGTCAGAGCCCCTTCGATCTGAGAGGGAGTTGGGTATGGCGGCGCATCTCCACAATCCTGCTTCAAAACAAGATTAAGGCCATGGAGGGCAGGTGTTTGGCGTCGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.17

Weight (kDa)

9.3

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 192
Acc36I ACCTGC 1 cut(s) 192
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 212
AgsI TTSAA 1 cut(s) 176
AjnI CCWGG 1 cut(s) 6
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 189
AspLEI GCGC 2 cut(s) 25, 156
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 122
BauI CACGAG 1 cut(s) 47
BbvCI CCTCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 66
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 8
BfaI CTAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 192
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 192
BseMII CTCAG 2 cut(s) 17, 122
BshFI GGCC 1 cut(s) 191
BslFI GGGAC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 73, 127
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 18, 123
BspMI ACCTGC 1 cut(s) 192
BspPI GGATC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 73, 127
BssNI GRCGYC 1 cut(s) 212
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 26, 131
BstDSI CCRYGG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 156
BstKTI GATC 2 cut(s) 76, 130
BstMBI GATC 2 cut(s) 73, 127
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 2 cut(s) 14, 65
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 2 cut(s) 25, 156
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 201
CsiI ACCWGGT 1 cut(s) 6
CviAII CATG 2 cut(s) 84, 193
CviJI RGCY 5 cut(s) 90, 105, 110, 120, 191
CviKI_1 RGCY 5 cut(s) 90, 105, 110, 120, 191
DdeI CTNAG 2 cut(s) 26, 131
DpnI GATC 2 cut(s) 75, 129
DpnII GATC 2 cut(s) 73, 127
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 87, 196
FaiI YATR 3 cut(s) 85, 148, 194
FaqI GGGAC 1 cut(s) 31
FatI CATG 2 cut(s) 83, 192
Fnu4HI GCNGC 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 1 cut(s) 111
GlaI GCGC 2 cut(s) 24, 155
GluI GCNGC 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 191
HgaI GACGC 1 cut(s) 201
HhaI GCGC 2 cut(s) 25, 156
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 2 cut(s) 87, 196
Hin6I GCGC 2 cut(s) 23, 154
HinP1I GCGC 2 cut(s) 23, 154
Hpy188I TCNGA 2 cut(s) 117, 132
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 26, 131
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 2 cut(s) 87, 196
HspAI GCGC 2 cut(s) 23, 154
Kzo9I GATC 2 cut(s) 73, 127
LpnPI CCDG 6 cut(s) 20, 65, 76, 87, 182, 187
LweI GCATC 1 cut(s) 165
MabI ACCWGGT 1 cut(s) 6
MaeI CTAG 1 cut(s) 111
MalI GATC 2 cut(s) 75, 129
MboI GATC 2 cut(s) 73, 127
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 122
MnlI CCTC 4 cut(s) 21, 34, 128, 190
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 73, 127
NlaIII CATG 2 cut(s) 87, 196
PaqCI CACCTGC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 2 cut(s) 73, 127
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 122
SetI ASST 3 cut(s) 12, 32, 206
SexAI ACCWGGT 1 cut(s) 6
SfaNI GCATC 1 cut(s) 165
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 63
SsiI CCGC 1 cut(s) 151
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 1 cut(s) 126
TauI GCSGC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.