Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011623

Physical Location & Seq

Genomic Coordinates Forward (+)

61249740 .. 61249925

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG431200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCGGCGAGGGCGCTTTCAAATGGACCAGGTTGTTGGGATGACACTGAGATTCCGGCCAAGCCGGGCTCGACTGAAATCGAGTTTTGGGATGGCGGCGAGGTGGTTGGGCGAGGAACTCGTGTTCGCCCATCGTGGTGGCGTGGATCTGCTGGCATGGGGCTTGTCGGGTTCAGGCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

61

Amino Acids

6.51

Weight (kDa)

6.11

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011623)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008557 RLG00000014754 RLG00000017617
rosa_multiflora	Rmu_sc0002748.1_g000007 Rmu_sc0009650.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252120 Rroxscaffold_6G00391710
rosa_samantha	Rh1AG247100 Rh1DG019000 Rh2AG131900 Rh2CG259400 Rh5BG386400 Rh5DG049100 Rh5DG273000 Rh6BG525300 Rh6DG516800 Rh7AG182500 Rh7AG466100 Rh7CG192000 Rh7DG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 96
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	120
BccI	CCATC	2 cut(s)	86, 139
BciT130I	CCWGG	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	66
BfaI	CTAG	1 cut(s)	184
BfoI	RGCGCY	1 cut(s)	17
BisI	GCNGC	2 cut(s)	6, 97
BlsI	GCNGC	2 cut(s)	7, 98
Bme1390I	CCNGG	2 cut(s)	30, 66
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	30, 66
BpuMI	CCSGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	46, 97
BseMII	CTCAG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	56, 65
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	146
BspACI	CCGC	2 cut(s)	5, 96
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	154
BssMI	GATC	1 cut(s)	146
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	46, 97
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	28, 64
BstX2I	RGATCY	1 cut(s)	146
BstXI	CCANNNNNNTGG	2 cut(s)	36, 138
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	46, 97
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	154
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	26
CsiI	ACCWGGT	1 cut(s)	28
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	6 cut(s)	59, 64, 69, 163, 178, 183
CviKI_1	RGCY	6 cut(s)	59, 64, 69, 163, 178, 183
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	71
FaeI	CATG	1 cut(s)	160
FaiI	YATR	1 cut(s)	158
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	6, 97
FokI	GGATG	2 cut(s)	53, 104
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	6, 97
FspBI	CTAG	1 cut(s)	184
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	2 cut(s)	6, 97
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	56, 65
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	56, 65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	146
LpnPI	CCDG	6 cut(s)	15, 42, 69, 78, 138, 160
MabI	ACCWGGT	1 cut(s)	28
MaeI	CTAG	1 cut(s)	184
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	3, 94, 107
MslI	CAYNNNNRTG	1 cut(s)	136
MspI	CCGG	2 cut(s)	56, 65
MspR9I	CCNGG	2 cut(s)	30, 66
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	7, 98
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	136
SatI	GCNGC	2 cut(s)	6, 97
Sau3AI	GATC	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	30, 66
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	2 cut(s)	34, 105
SexAI	ACCWGGT	1 cut(s)	28
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	136
SsiI	CCGC	2 cut(s)	5, 96
SspMI	CTAG	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	28, 64
TaqI	TCGA	2 cut(s)	71, 81
TauI	GCSGC	2 cut(s)	8, 99
TfiI	GAWTC	1 cut(s)	52
TscAI	CASTG	1 cut(s)	52
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	26
XspI	CTAG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.