Rh7AG466100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011623
Physical Location & Seq
Reverse (-)
64312221 .. 64312436
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG466100.1

Sequence Viewer

Length: 216 bp
ATGACTGAAATTGGGTTTAGGGATGGCGACGAGGTGGTTGGGCGAGGAACTCGAGTTAGACCATCGTGGTGGTGGGGAGCTGCTGCCACGGGGTTTGTCGGAGTCAGGCTCGACTATTCAGAGTCCCTCCGATCTGAGAGGGGACTGGGTGTGGCGGAGCTATTGCGCAGTCCCGGGTCGAACCAAGATCCGCGCCACGGAGGGCGGCGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.88

Weight (kDa)

11.0

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 207
AccII CGCG 1 cut(s) 193
AciI CCGC 3 cut(s) 155, 191, 205
AclWI GGATC 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 197
AluBI AGCT 2 cut(s) 80, 160
AluI AGCT 2 cut(s) 80, 160
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 2 cut(s) 51, 173
ApeKI GCWGC 2 cut(s) 80, 83
AspLEI GCGC 3 cut(s) 168, 195, 210
AsuC2I CCSGG 2 cut(s) 174, 175
AvaI CYCGRG 2 cut(s) 51, 173
BanI GGYRCC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 67, 70
BccI CCATC 2 cut(s) 17, 70
BcnI CCSGG 2 cut(s) 174, 175
BfoI RGCGCY 1 cut(s) 211
BisI GCNGC 3 cut(s) 81, 84, 206
BlsI GCNGC 3 cut(s) 82, 85, 207
Bme1390I CCNGG 2 cut(s) 174, 175
BmeT110I CYCGRG 2 cut(s) 51, 173
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 2 cut(s) 174, 175
BmrI ACTGGG 1 cut(s) 155
BmuI ACTGGG 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpuMI CCSGG 2 cut(s) 174, 175
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 3 cut(s) 87, 173, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 150
BseDI CCNNGG 3 cut(s) 87, 173, 196
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 67, 70
Bsh1236I CGCG 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 207
BsiHKCI CYCGRG 2 cut(s) 51, 173
BsiSI CCGG 2 cut(s) 174, 211
BslFI GGGAC 3 cut(s) 109, 156, 156
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 3 cut(s) 109, 156, 156
BsoBI CYCGRG 2 cut(s) 51, 173
Bsp143I GATC 2 cut(s) 131, 187
BspACI CCGC 3 cut(s) 155, 191, 205
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 87, 173, 196
BssMI GATC 2 cut(s) 131, 187
BssNI GRCGYC 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 2 cut(s) 87, 196
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 3 cut(s) 168, 195, 210
BstKTI GATC 2 cut(s) 134, 190
BstMBI GATC 2 cut(s) 131, 187
BstSCI CCNGG 2 cut(s) 172, 173
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 67, 70
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 187
BtgI CCRYGG 2 cut(s) 87, 196
BtsCI GGATG 1 cut(s) 28
CfoI GCGC 3 cut(s) 168, 195, 210
Cfr10I RCCGGY 1 cut(s) 210
Cfr9I CCCGGG 1 cut(s) 173
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviJI RGCY 3 cut(s) 80, 109, 160
CviKI_1 RGCY 3 cut(s) 80, 109, 160
DdeI CTNAG 1 cut(s) 135
DinI GGCGCC 1 cut(s) 209
DpnI GATC 2 cut(s) 133, 189
DpnII GATC 2 cut(s) 131, 187
EciI GGCGGA 1 cut(s) 170
Eco88I CYCGRG 2 cut(s) 51, 173
EgeI GGCGCC 1 cut(s) 209
EheI GGCGCC 1 cut(s) 209
FaqI GGGAC 3 cut(s) 109, 156, 156
Fnu4HI GCNGC 3 cut(s) 81, 84, 206
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 3 cut(s) 81, 84, 206
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 3 cut(s) 167, 194, 209
GluI GCNGC 3 cut(s) 81, 84, 206
HaeII RGCGCY 1 cut(s) 211
HapII CCGG 2 cut(s) 174, 211
HhaI GCGC 3 cut(s) 168, 195, 210
Hin1I GRCGYC 1 cut(s) 208
Hin6I GCGC 3 cut(s) 166, 193, 208
HinP1I GCGC 3 cut(s) 166, 193, 208
HinfI GANTC 2 cut(s) 102, 122
HpaII CCGG 2 cut(s) 174, 211
Hpy188I TCNGA 4 cut(s) 101, 121, 131, 136
Hpy99I CGWCG 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 208
HspAI GCGC 3 cut(s) 166, 193, 208
KasI GGCGCC 1 cut(s) 207
Kzo9I GATC 2 cut(s) 131, 187
LmnI GCTCC 2 cut(s) 77, 157
LpnPI CCDG 3 cut(s) 91, 131, 187
Lsp1109I GCAGC 2 cut(s) 67, 70
MalI GATC 2 cut(s) 133, 189
MboI GATC 2 cut(s) 131, 187
MflI RGATCY 1 cut(s) 187
MluCI AATT 1 cut(s) 9
Mly113I GGCGCC 1 cut(s) 208
MlyI GAGTC 2 cut(s) 111, 131
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 5 cut(s) 25, 38, 132, 137, 194
MslI CAYNNNNRTG 1 cut(s) 67
MspI CCGG 2 cut(s) 174, 211
MspR9I CCNGG 2 cut(s) 174, 175
MvnI CGCG 1 cut(s) 193
NarI GGCGCC 1 cut(s) 208
NciI CCSGG 2 cut(s) 174, 175
NdeII GATC 2 cut(s) 131, 187
NlaIV GGNNCC 1 cut(s) 209
NsbI TGCGCA 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 51
PkrI GCNGC 3 cut(s) 82, 85, 207
PleI GAGTC 2 cut(s) 110, 130
PluTI GGCGCC 1 cut(s) 211
PpsI GAGTC 2 cut(s) 110, 130
PspN4I GGNNCC 1 cut(s) 209
PspXI VCTCGAGB 1 cut(s) 51
PsuI RGATCY 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 67
SatI GCNGC 3 cut(s) 81, 84, 206
Sau3AI GATC 2 cut(s) 131, 187
SchI GAGTC 2 cut(s) 111, 131
ScrFI CCNGG 2 cut(s) 174, 175
SetI ASST 3 cut(s) 36, 82, 162
SfoI GGCGCC 1 cut(s) 209
Sfr274I CTCGAG 1 cut(s) 51
SgrAI CRCCGGYG 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 51
SmaI CCCGGG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 1 cut(s) 9
SsiI CCGC 3 cut(s) 155, 191, 205
SspDI GGCGCC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 172, 173
TaqI TCGA 3 cut(s) 52, 111, 179
TasI AATT 1 cut(s) 9
TauI GCSGC 1 cut(s) 208
TseI GCWGC 2 cut(s) 80, 83
TspGWI ACGGA 1 cut(s) 213
TspMI CCCGGG 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XhoI CTCGAG 1 cut(s) 51
XmaI CCCGGG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.