Rh7CG192000

Protein trichome birefringence-like 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011623
Physical Location & Seq
Forward (+)
16941313 .. 16942760
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG192000.1

Sequence Viewer

Length: 525 bp
ATGGTGGCGAGGGCGCTTTCAAATGGGCCACGATGTTGGGACGGAGCCGAGATTCTGGCCAAGCCGGGCTCGATGAGTTTTGGGATGGCGGCGAGGGGGTTGGGTGAGGAACTCGAGTTCGCCCATCATGGTGGTATGGAGCTGCTGGCATGGGGCTTGTCGGGTTCAGGCTCGGCTAGTCAAAGGCCTTCCGATCTGAGAGGGAATTGGTTTTGGCGGAGCATTTTCACAATCCTGTTTCGTAACAGGATCCGAGCCAAGGAGGGCGGCGCCGGTGAAAGTGTTTTGAGACGTGGTGACGAGGGTGGGATCGGCCTTCTCCGGTGGAATTCAGACGGGGATATTGGTGCGGCTCCTCGGATCAGTAGTTTCACATCTGAAACACTTCCTCCCAAGTACGACAACACCTGTAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAAATCCAACGACTGCAAACTCGTCAAGTGGAGGTGGAAGCCTAAGCATTGTGATCTGGCGAATCTCCGGCCCTAA

Protein Analysis

174

Amino Acids

19.18

Weight (kDa)

9.43

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 131 - 168 7.3e-08 PMR5 N terminal Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AciI CCGC 4 cut(s) 89, 217, 267, 350
AclWI GGATC 4 cut(s) 244, 257, 317, 368
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 328
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 21, 424
AjiI CACGTC 1 cut(s) 293
AloI GAACNNNNNNTCC 2 cut(s) 101, 133
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 4 cut(s) 244, 257, 317, 368
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 5 cut(s) 26, 57, 185, 313, 518
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 328
Asp700I GAANNNNTTC 1 cut(s) 384
AspLEI GCGC 2 cut(s) 16, 272
AspS9I GGNCC 2 cut(s) 26, 519
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 3 cut(s) 116, 287, 308
AvaI CYCGRG 1 cut(s) 113
BalI TGGCCA 1 cut(s) 59
BamHI GGATCC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 79, 132
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 1 cut(s) 177
BfoI RGCGCY 2 cut(s) 17, 273
BglII AGATCT 1 cut(s) 417
BisI GCNGC 4 cut(s) 90, 143, 268, 351
BlsI GCNGC 4 cut(s) 91, 144, 269, 352
Bme1390I CCNGG 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 26, 519
BmiI GGNNCC 4 cut(s) 46, 251, 271, 354
BmrFI CCNGG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 258, 356
BsaWI WCCGGW 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 258, 356
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 5 cut(s) 28, 59, 187, 315, 520
BshNI GGYRCC 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 4 cut(s) 65, 273, 322, 517
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 283
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 5 cut(s) 28, 59, 187, 315, 520
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 6 cut(s) 193, 249, 309, 360, 417, 502
BspACI CCGC 4 cut(s) 89, 217, 267, 350
BspANI GGCC 5 cut(s) 28, 59, 187, 315, 520
BspCNI CTCAG 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 46, 251, 271, 354
BspPI GGATC 4 cut(s) 244, 257, 317, 368
BspT107I GGYRCC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 258, 356
BssMI GATC 6 cut(s) 193, 249, 309, 360, 417, 502
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 197, 492
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 2 cut(s) 17, 273
BstHHI GCGC 2 cut(s) 16, 272
BstKTI GATC 6 cut(s) 196, 252, 312, 363, 420, 505
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 6 cut(s) 193, 249, 309, 360, 417, 502
BstMWI GCNNNNNNNGC 2 cut(s) 435, 444
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 249, 417
BstXI CCANNNNNNTGG 2 cut(s) 36, 131
BstYI RGATCY 2 cut(s) 249, 417
BsuRI GGCC 5 cut(s) 28, 59, 187, 315, 520
BtrI CACGTC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 2 cut(s) 16, 272
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 26, 519
Csp6I GTAC 1 cut(s) 397
CviAII CATG 2 cut(s) 128, 150
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 2 cut(s) 197, 492
DinI GGCGCC 1 cut(s) 271
DpnI GATC 6 cut(s) 195, 251, 311, 362, 419, 504
DpnII GATC 6 cut(s) 193, 249, 309, 360, 417, 502
EaeI YGGCCR 1 cut(s) 57
EciI GGCGGA 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 271
EheI GGCGCC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 2 cut(s) 131, 153
FaiI YATR 3 cut(s) 129, 137, 151
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 53
FatI CATG 2 cut(s) 127, 149
Fnu4HI GCNGC 4 cut(s) 90, 143, 268, 351
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 4 cut(s) 90, 143, 268, 351
FspBI CTAG 1 cut(s) 177
GlaI GCGC 2 cut(s) 15, 271
GluI GCNGC 4 cut(s) 90, 143, 268, 351
HaeII RGCGCY 2 cut(s) 17, 273
HaeIII GGCC 5 cut(s) 28, 59, 187, 315, 520
HapII CCGG 4 cut(s) 65, 273, 322, 517
HhaI GCGC 2 cut(s) 16, 272
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 2 cut(s) 131, 153
Hin6I GCGC 2 cut(s) 14, 270
HinP1I GCGC 2 cut(s) 14, 270
HinfI GANTC 2 cut(s) 52, 511
HpaII CCGG 4 cut(s) 65, 273, 322, 517
HphI GGTGA 3 cut(s) 116, 287, 308
Hpy188I TCNGA 6 cut(s) 193, 198, 254, 334, 360, 379
HpyAV CCTTC 2 cut(s) 198, 326
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 438, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 435, 444
HpyF3I CTNAG 2 cut(s) 197, 492
HpySE526I ACGT 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 2 cut(s) 131, 153
HspAI GCGC 2 cut(s) 14, 270
KasI GGCGCC 1 cut(s) 269
Kzo9I GATC 6 cut(s) 193, 249, 309, 360, 417, 502
LmnI GCTCC 4 cut(s) 44, 139, 219, 358
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 242, 296
MalI GATC 6 cut(s) 195, 251, 311, 362, 419, 504
MboI GATC 6 cut(s) 193, 249, 309, 360, 417, 502
MboII GAAGA 1 cut(s) 412
MflI RGATCY 2 cut(s) 249, 417
MhlI GDGCHC 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 3 cut(s) 205, 328, 433
MluNI TGGCCA 1 cut(s) 59
Mly113I GGCGCC 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 9 cut(s) 3, 87, 100, 194, 256, 295, 366, 399, 474
Mox20I TGGCCA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 129
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 4 cut(s) 65, 273, 322, 517
MspR9I CCNGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 435, 444
NarI GGCGCC 1 cut(s) 270
NciI CCSGG 1 cut(s) 66
NdeII GATC 6 cut(s) 193, 249, 309, 360, 417, 502
NlaIII CATG 2 cut(s) 131, 153
NlaIV GGNNCC 4 cut(s) 46, 251, 271, 354
NmeAIII GCCGAG 2 cut(s) 73, 152
NmuCI GTSAC 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 113
PceI AGGCCT 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 52, 511
PkrI GCNGC 4 cut(s) 91, 144, 269, 352
PluTI GGCGCC 1 cut(s) 273
PspN4I GGNNCC 4 cut(s) 46, 251, 271, 354
PspPI GGNCC 2 cut(s) 26, 519
PspXI VCTCGAGB 1 cut(s) 113
PsuI RGATCY 2 cut(s) 249, 417
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 129
SatI GCNGC 4 cut(s) 90, 143, 268, 351
Sau3AI GATC 6 cut(s) 193, 249, 309, 360, 417, 502
Sau96I GGNCC 2 cut(s) 26, 519
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 71
SetI ASST 4 cut(s) 144, 295, 410, 485
SfoI GGCGCC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 113
SgrAI CRCCGGYG 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 3 cut(s) 205, 328, 433
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 4 cut(s) 89, 217, 267, 350
SspDI GGCGCC 1 cut(s) 269
SspMI CTAG 1 cut(s) 177
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 258
TaiI ACGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 71, 114
TasI AATT 3 cut(s) 205, 328, 433
TauI GCSGC 3 cut(s) 92, 270, 353
TfiI GAWTC 2 cut(s) 52, 511
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 57
XapI RAATTY 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.