Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Forward (+)

20445743 .. 20448055

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCATAAATCGGTATATTTAAAGGCCAAGCAGTCCAATGGGCCGGGAAATCCAGAGAACGAAGGCTGGCAATATTGCATGAAGAAAGGACAGGGTCAAACTCCGAAACTTCCTTATTTTGATTGGACAGGTTTATTTGGATTTAGAAATTTGTTTTTATTGAGAAGTAATCAGCTTAAATATGTAGCTAACCGAAAGGATCTAGATTTGTTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCCTGCTCCTCACCAAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGATTGCCAACCTTGGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGGCCCCCTTAAGTCTTTCAGTGCTCAGGCCTACACCCTAGTGAGGAAGGGTGACCTCTTGATTGTGAGAGGAGGAATGAGGAGTGTCGAGTTCAAGGTTATTGAGACTGATCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

162

Amino Acids

18.35

Weight (kDa)

10.09

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	207, 470
AcsI	RAATTY	2 cut(s)	148, 350
AfiI	CCNNNNNNNGG	1 cut(s)	408
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	214, 280, 343, 355, 460
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	2 cut(s)	175, 188
AluI	AGCT	2 cut(s)	175, 188
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	207, 470
AoxI	GGCC	4 cut(s)	24, 41, 367, 393
ApaI	GGGCCC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	148, 350
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	3 cut(s)	41, 367, 368
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	245, 428
BaeGI	GKGCMC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	2 cut(s)	203, 404
BfrI	CTTAAG	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	45
BmgT120I	GGNCC	3 cut(s)	41, 367, 368
BmiI	GGNNCC	2 cut(s)	369, 370
BmrFI	CCNGG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	325, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	325, 334
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	221, 404
BseRI	GAGGAG	3 cut(s)	240, 450, 460
BseSI	GKGCMC	1 cut(s)	371
BshFI	GGCC	4 cut(s)	26, 43, 369, 395
BsiHKAI	GWGCWC	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	4 cut(s)	26, 43, 369, 395
Bsp120I	GGGCCC	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	371, 391
Bsp143I	GATC	2 cut(s)	199, 475
BspANI	GGCC	4 cut(s)	26, 43, 369, 395
BspCNI	CTCAG	2 cut(s)	222, 403
BspLI	GGNNCC	2 cut(s)	369, 370
BspPI	GGATC	2 cut(s)	207, 470
BspTI	CTTAAG	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	325, 334
BssMI	GATC	2 cut(s)	199, 475
BssT1I	CCWWGG	1 cut(s)	325
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	68, 301
BstDEI	CTNAG	2 cut(s)	230, 390
BstDSI	CCRYGG	1 cut(s)	334
BstEII	GGTNACC	1 cut(s)	416
BstKTI	GATC	2 cut(s)	202, 478
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	199, 475
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	43
BstSLI	GKGCMC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	4 cut(s)	26, 43, 369, 395
BtgI	CCRYGG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	68, 301
Cfr13I	GGNCC	3 cut(s)	41, 367, 368
CviAII	CATG	2 cut(s)	79, 218
CviJI	RGCY	9 cut(s)	26, 43, 66, 175, 188, 241, 299, 369, 395
CviKI_1	RGCY	9 cut(s)	26, 43, 66, 175, 188, 241, 299, 369, 395
DdeI	CTNAG	2 cut(s)	230, 390
DpnI	GATC	2 cut(s)	201, 477
DpnII	GATC	2 cut(s)	199, 475
DraI	TTTAAA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	416
EcoO109I	RGGNCCY	2 cut(s)	367, 368
EcoO65I	GGTNACC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	82, 221
FaiI	YATR	5 cut(s)	6, 16, 80, 183, 219
FatI	CATG	2 cut(s)	78, 217
FriOI	GRGCYC	1 cut(s)	371
FspBI	CTAG	2 cut(s)	203, 404
HaeIII	GGCC	4 cut(s)	26, 43, 369, 395
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	82, 221
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	245, 428
Hpy188I	TCNGA	2 cut(s)	105, 231
Hpy188III	TCNNGA	5 cut(s)	53, 203, 343, 424, 483
HpyAV	CCTTC	2 cut(s)	56, 406
HpyCH4V	TGCA	3 cut(s)	4, 78, 284
HpyF3I	CTNAG	2 cut(s)	230, 390
Hsp92II	CATG	2 cut(s)	82, 221
Kzo9I	GATC	2 cut(s)	199, 475
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	52, 57, 66, 77, 114, 258, 279, 313, 377
MaeI	CTAG	2 cut(s)	203, 404
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	201, 477
MboI	GATC	2 cut(s)	199, 475
MboII	GAAGA	2 cut(s)	94, 371
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	371, 391
MluCI	AATT	2 cut(s)	148, 350
MnlI	CCTC	6 cut(s)	261, 402, 428, 431, 431, 438
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	4 cut(s)	20, 177, 312, 375
MslI	CAYNNNNRTG	1 cut(s)	404
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	199, 475
NlaIII	CATG	2 cut(s)	82, 221
NlaIV	GGNNCC	2 cut(s)	369, 370
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	395
PctI	GAATGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	93
PspEI	GGTNACC	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	369, 370
PspOMI	GGGCCC	1 cut(s)	367
PspPI	GGNCC	3 cut(s)	41, 367, 368
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	4 cut(s)	20, 177, 312, 375
Sau3AI	GATC	2 cut(s)	199, 475
Sau96I	GGNCC	3 cut(s)	41, 367, 368
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	371, 391
SetI	ASST	7 cut(s)	133, 177, 190, 228, 327, 423, 465
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	148, 350
SseBI	AGGCCT	1 cut(s)	395
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	2 cut(s)	203, 404
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	325
TaqI	TCGA	1 cut(s)	453
TasI	AATT	2 cut(s)	148, 350
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	4 cut(s)	20, 177, 312, 375
Tru9I	TTAA	4 cut(s)	20, 177, 312, 375
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	93
Vha464I	CTTAAG	1 cut(s)	374
XapI	RAATTY	2 cut(s)	148, 350
XbaI	TCTAGA	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	2 cut(s)	203, 404
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.