Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Reverse (-)

30112123 .. 30121751

Gene Structure 9629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG274200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCCTCACTTGTACTTGACCGCGATCAGACCATAAAAAATGCCATCAAACAGGTTGAAGAAATGAGAAAAGATTTGTCTAATGCACTTCATGCTGCTGCATCTGTTAAGAGTAGAACTGTTGTAGCTGAGGTTGTTGAAATTGACGGTGGGAGTGGATCTGCTTCTTTGACAGATCTGTTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCTTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCCAACCTTGGTCGCCGTGGATACAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGAATCTTGGACGCCCTGTCTTTCCAGACGGCCAACAAGCCCAGCCCAACGAAGCAGCTCAGCCCTCTAGTCAGCCAAGCCAAAGCTTCGTACTTTTTGACGGTGTAGGCGATGCGATCGATACAGGGCTCGGGAAACAGCGTGCGTTAGTACGAGACGAGCTCGTCATTGATGGGGAGGGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

182

Amino Acids

19.73

Weight (kDa)

9.24

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	3 cut(s)	15, 453, 513
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	5 cut(s)	59, 140, 184, 250, 325
AhdI	GACNNNNNGTC	1 cut(s)	377
AluBI	AGCT	5 cut(s)	128, 286, 419, 447, 523
AluI	AGCT	5 cut(s)	128, 286, 419, 447, 523
Alw21I	GWGCWC	2 cut(s)	361, 525
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	3 cut(s)	95, 98, 416
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	492, 525
Bbv12I	GWGCWC	2 cut(s)	361, 525
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	82, 85, 428
BccI	CCATC	2 cut(s)	53, 527
BceAI	ACGGC	2 cut(s)	288, 406
BciVI	GTATCC	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	429
BfrI	CTTAAG	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	3 cut(s)	96, 99, 417
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	3 cut(s)	97, 100, 418
Bme18I	GGWCC	1 cut(s)	337
BmeRI	GACNNNNNGTC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	339
BmsI	GCATC	2 cut(s)	110, 463
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
Bpu10I	CCTNAGC	1 cut(s)	129
Bpu1102I	GCTNAGC	1 cut(s)	420
Bsa29I	ATCGAT	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	295, 304
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	295, 304
BseMII	CTCAG	4 cut(s)	120, 191, 374, 434
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	82, 85, 428
BseYI	CCCAGC	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	480
BsiEI	CGRYCG	1 cut(s)	480
BsiHKAI	GWGCWC	2 cut(s)	361, 525
BsiHKCI	CYCGRG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	510
BsmBI	CGTCTC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	491
Bsp1286I	GDGCHC	3 cut(s)	361, 492, 525
Bsp143I	GATC	5 cut(s)	25, 158, 175, 477, 543
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	4 cut(s)	121, 192, 373, 433
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	295, 304
BssMI	GATC	5 cut(s)	25, 158, 175, 477, 543
BssNI	GRCGYC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	3 cut(s)	121, 149, 464
BstACI	GRCGYC	1 cut(s)	373
BstAFI	CTTAAG	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	271, 288, 504
BstDEI	CTNAG	4 cut(s)	129, 200, 360, 420
BstDSI	CCRYGG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	5 cut(s)	28, 161, 178, 480, 546
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	5 cut(s)	25, 158, 175, 477, 543
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	82, 85, 428
BstX2I	RGATCY	3 cut(s)	158, 175, 543
BstYI	RGATCY	3 cut(s)	158, 175, 543
Bsu15I	ATCGAT	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	393
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	271, 288, 504
Cfr13I	GGNCC	1 cut(s)	337
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	14, 452, 512
CviAII	CATG	2 cut(s)	92, 188
CviQI	GTAC	3 cut(s)	14, 452, 512
DdeI	CTNAG	4 cut(s)	129, 200, 360, 420
DpnI	GATC	5 cut(s)	27, 160, 177, 479, 545
DpnII	GATC	5 cut(s)	25, 158, 175, 477, 543
DrdI	GACNNNNNNGTC	1 cut(s)	524
DriI	GACNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	391
Eam1105I	GACNNNNNGTC	1 cut(s)	377
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	2 cut(s)	492, 525
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	2 cut(s)	492, 525
ErhI	CCWWGG	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	510
FaeI	CATG	2 cut(s)	95, 191
FaiI	YATR	3 cut(s)	35, 93, 189
FatI	CATG	2 cut(s)	91, 187
Fnu4HI	GCNGC	3 cut(s)	96, 99, 417
FriOI	GRGCYC	2 cut(s)	492, 525
Fsp4HI	GCNGC	3 cut(s)	96, 99, 417
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	3 cut(s)	96, 99, 417
GsaI	CCCAGC	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	393
HgaI	GACGC	1 cut(s)	381
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	95, 191
HindIII	AAGCTT	2 cut(s)	284, 445
HinfI	GANTC	1 cut(s)	364
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	4 cut(s)	30, 201, 363, 548
Hpy188III	TCNNGA	2 cut(s)	386, 493
HpyCH4III	ACNGT	3 cut(s)	121, 149, 464
HpyCH4V	TGCA	3 cut(s)	86, 101, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	4 cut(s)	129, 200, 360, 420
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	95, 191
Kzo9I	GATC	5 cut(s)	25, 158, 175, 477, 543
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	7 cut(s)	38, 249, 283, 390, 399, 416, 471
Lsp1109I	GCAGC	3 cut(s)	82, 85, 428
LweI	GCATC	2 cut(s)	110, 463
MaeI	CTAG	1 cut(s)	429
MalI	GATC	5 cut(s)	27, 160, 177, 479, 545
MboI	GATC	5 cut(s)	25, 158, 175, 477, 543
MboII	GAAGA	2 cut(s)	71, 341
MflI	RGATCY	3 cut(s)	158, 175, 543
MhlI	GDGCHC	3 cut(s)	361, 492, 525
MluCI	AATT	2 cut(s)	141, 320
MnlI	CCTC	5 cut(s)	16, 124, 231, 436, 532
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	3 cut(s)	108, 282, 345
MspCI	CTTAAG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	256
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	5 cut(s)	25, 158, 175, 477, 543
NlaIII	CATG	2 cut(s)	95, 191
NlaIV	GGNNCC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	97, 100, 418
Ple19I	CGATCG	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
PsuI	RGATCY	3 cut(s)	158, 175, 543
PvuI	CGATCG	1 cut(s)	480
RsaI	GTAC	3 cut(s)	15, 453, 513
RsaNI	GTAC	3 cut(s)	14, 452, 512
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	108, 282, 345
SatI	GCNGC	3 cut(s)	96, 99, 417
Sau3AI	GATC	5 cut(s)	25, 158, 175, 477, 543
Sau96I	GGNCC	1 cut(s)	337
SduI	GDGCHC	3 cut(s)	361, 492, 525
SetI	ASST	9 cut(s)	57, 130, 135, 198, 288, 297, 421, 449, 525
SfaNI	GCATC	2 cut(s)	110, 463
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	141, 320
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	525
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	3 cut(s)	121, 149, 464
TaqI	TCGA	1 cut(s)	480
TasI	AATT	2 cut(s)	141, 320
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	3 cut(s)	108, 282, 345
Tru9I	TTAA	3 cut(s)	108, 282, 345
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	3 cut(s)	95, 98, 416
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.