Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Forward (+)

50056831 .. 50059344

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCATAAATCGGTATATTTAAAGGCCAAGCAGTCCAATGGGGCGGGAAATCCAGAGAACGAAGGCTGGCAATATTGCATGAAGAAAGGACAGGGTCGAACTCCGAAACTTCCTTATTTTGATTGGACAGGTTTATTTGGATTTAGAAATTTGTTTTTATTGAGAAGTAATCAGCTTAAATATGTAGCTAACCGAAAGGATCTAGATCTGTTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCCTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCCAACCTTAGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGGCCTACACCCTAGTGAGGAAGGGTGATCTCTTGATTGTGAGAGGAGGAATGAGGAGTGTCGAGTTCAAGGTTATTGAGACTGATCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

162

Amino Acids

18.47

Weight (kDa)

10.15

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	207, 470
AcsI	RAATTY	2 cut(s)	148, 350
AfiI	CCNNNNNNNGG	1 cut(s)	408
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	214, 280, 343, 355, 460
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	3 cut(s)	175, 188, 316
AluI	AGCT	3 cut(s)	175, 188, 316
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	207, 470
AoxI	GGCC	2 cut(s)	24, 393
ApoI	RAATTY	2 cut(s)	148, 350
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	245, 428
AvaII	GGWCC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	2 cut(s)	203, 404
BfrI	CTTAAG	1 cut(s)	374
BglII	AGATCT	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	221, 404
BseRI	GAGGAG	3 cut(s)	240, 450, 460
BshFI	GGCC	2 cut(s)	26, 395
BsiHKAI	GWGCWC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	26, 395
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	199, 205, 418, 475
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	26, 395
BspCNI	CTCAG	2 cut(s)	222, 403
BspLI	GGNNCC	1 cut(s)	369
BspPI	GGATC	2 cut(s)	207, 470
BspTI	CTTAAG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	4 cut(s)	199, 205, 418, 475
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	68, 301, 318
BstDEI	CTNAG	3 cut(s)	230, 326, 390
BstDSI	CCRYGG	1 cut(s)	334
BstKTI	GATC	4 cut(s)	202, 208, 421, 478
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	4 cut(s)	199, 205, 418, 475
BstX2I	RGATCY	2 cut(s)	199, 205
BstYI	RGATCY	2 cut(s)	199, 205
BsuRI	GGCC	2 cut(s)	26, 395
BtgI	CCRYGG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	68, 301, 318
Cfr13I	GGNCC	1 cut(s)	367
CviAII	CATG	2 cut(s)	79, 218
CviJI	RGCY	8 cut(s)	26, 66, 175, 188, 241, 299, 316, 395
CviKI_1	RGCY	8 cut(s)	26, 66, 175, 188, 241, 299, 316, 395
DdeI	CTNAG	3 cut(s)	230, 326, 390
DpnI	GATC	4 cut(s)	201, 207, 420, 477
DpnII	GATC	4 cut(s)	199, 205, 418, 475
DraI	TTTAAA	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	82, 221
FaiI	YATR	5 cut(s)	6, 16, 80, 183, 219
FatI	CATG	2 cut(s)	78, 217
FauI	CCCGC	1 cut(s)	37
FspBI	CTAG	2 cut(s)	203, 404
HaeIII	GGCC	2 cut(s)	26, 395
Hin1II	CATG	2 cut(s)	82, 221
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	1 cut(s)	339
HphI	GGTGA	2 cut(s)	245, 428
Hpy188I	TCNGA	2 cut(s)	105, 231
Hpy188III	TCNNGA	5 cut(s)	53, 203, 343, 424, 483
HpyAV	CCTTC	2 cut(s)	56, 406
HpyCH4V	TGCA	3 cut(s)	4, 78, 284
HpyF3I	CTNAG	3 cut(s)	230, 326, 390
Hsp92II	CATG	2 cut(s)	82, 221
Kzo9I	GATC	4 cut(s)	199, 205, 418, 475
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	52, 66, 77, 114, 258, 279, 313, 377
MaeI	CTAG	2 cut(s)	203, 404
MalI	GATC	4 cut(s)	201, 207, 420, 477
MboI	GATC	4 cut(s)	199, 205, 418, 475
MboII	GAAGA	2 cut(s)	94, 371
MflI	RGATCY	2 cut(s)	199, 205
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	2 cut(s)	148, 350
MnlI	CCTC	5 cut(s)	261, 402, 428, 431, 438
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	4 cut(s)	20, 177, 312, 375
MslI	CAYNNNNRTG	1 cut(s)	404
MspCI	CTTAAG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	286
NdeII	GATC	4 cut(s)	199, 205, 418, 475
NlaIII	CATG	2 cut(s)	82, 221
NlaIV	GGNNCC	1 cut(s)	369
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	395
PctI	GAATGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	367
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	2 cut(s)	199, 205
PsyI	GACNNNGTC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	4 cut(s)	20, 177, 312, 375
Sau3AI	GATC	4 cut(s)	199, 205, 418, 475
Sau96I	GGNCC	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	7 cut(s)	133, 177, 190, 228, 318, 327, 465
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	148, 350
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	44
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	2 cut(s)	203, 404
StuI	AGGCCT	1 cut(s)	395
TaqI	TCGA	2 cut(s)	97, 453
TasI	AATT	2 cut(s)	148, 350
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	4 cut(s)	20, 177, 312, 375
Tru9I	TTAA	4 cut(s)	20, 177, 312, 375
TscAI	CASTG	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	93
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	2 cut(s)	148, 350
XbaI	TCTAGA	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	2 cut(s)	203, 404
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.