Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Forward (+)

36839449 .. 36840517

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0229300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATTTGCAGAGGAGACCATGAAGTTCGTTGTGTGCAAAGGAAGCTGTTGTTGGAATCCCTTGCAAATGAACTTCCTAGTGGCACAACCAGGTTCTCATCAAAATTTGTTTCAATCGAAGAATCAGGCTACTTTAAGCTTCTGCATCTTGCTGATGGAACCATCCTCAAAGACAAAGGAAAATCCGCTATTAGAGGTCAGGCAAACTTCAACAGCAATCATGGATTTGATCCCATATCCATGCGGTTCTTCAGGCATGGAGTTAGATCTGGTGTCATCCCTTGTGATAAAAAAAGCTGTTTATCGGTACTTCACTTGGGATCCCTCAAGCCAAGATTAGAGTTTCACACCATTTTTTTTGGGTGGGGGGCGGCTTTTGCTTCCATTATGATTCCTTCTTTTGAGACAAATTTTAACAGATCCTTAAATTTGTTGTTTACTGCTCATGTCTTAGAGAAAGGTTTGGAAGAGAATCCAGCTCAATTGAGGCAATTTGTGTCGAGCAAGCTAGGAAAGATTCCTGATGAAGGGAGCGAAGGAAGGTTGATGACCTTGTTGAACAGATTTCTGGGGCCTTTAATCCCCAAGTTGCTGTTGAAAAAGATTGATTTTGATTGTGGGAAGCTCAGCACCACTTGCATTACTTTCTCTTGGTATCATAGATATGCAATGATTCATGCTTTAAAATTCTGGAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

233

Amino Acids

26.36

Weight (kDa)

9.55

Isoelectric Point (pI)

19.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	186, 244, 371
AclWI	GGATC	4 cut(s)	224, 315, 328, 414
AcsI	RAATTY	5 cut(s)	104, 409, 427, 686, 694
AcuI	CTGAAG	1 cut(s)	235
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	4 cut(s)	114, 211, 559, 598
AjnI	CCWGG	1 cut(s)	89
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	6 cut(s)	46, 139, 297, 479, 508, 625
AluI	AGCT	6 cut(s)	46, 139, 297, 479, 508, 625
Alw26I	GTCTC	2 cut(s)	9, 398
AlwI	GGATC	4 cut(s)	224, 315, 328, 414
AoxI	GGCC	1 cut(s)	572
ApoI	RAATTY	5 cut(s)	104, 409, 427, 686, 694
AspS9I	GGNCC	1 cut(s)	572
BamHI	GGATCC	1 cut(s)	320
BccI	CCATC	2 cut(s)	149, 170
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	9, 398
BfaI	CTAG	2 cut(s)	78, 509
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	372
BlpI	GCTNAGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	3 cut(s)	160, 322, 573
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	626
BpuEI	CTTGAG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	162, 276
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	1 cut(s)	640
BseRI	GAGGAG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	2 cut(s)	9, 398
BsnI	GGCC	1 cut(s)	574
Bso31I	GGTCTC	1 cut(s)	9
Bsp143I	GATC	4 cut(s)	229, 266, 320, 419
Bsp1720I	GCTNAGC	1 cut(s)	626
BspACI	CCGC	3 cut(s)	186, 244, 371
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	1 cut(s)	639
BspLI	GGNNCC	3 cut(s)	160, 322, 573
BspPI	GGATC	4 cut(s)	224, 315, 328, 414
BspTNI	GGTCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	675
BssMI	GATC	4 cut(s)	229, 266, 320, 419
Bst2UI	CCWGG	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	451, 626
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	162, 276
BstKTI	GATC	4 cut(s)	232, 269, 323, 422
BstMAI	GTCTC	2 cut(s)	9, 398
BstMBI	GATC	4 cut(s)	229, 266, 320, 419
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 377, 636
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstX2I	RGATCY	3 cut(s)	266, 320, 419
BstYI	RGATCY	3 cut(s)	266, 320, 419
BsuRI	GGCC	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	162, 276
Cac8I	GCNNGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	6 cut(s)	20, 221, 241, 257, 446, 677
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	451, 626
DpnI	GATC	4 cut(s)	231, 268, 322, 421
DpnII	GATC	4 cut(s)	229, 266, 320, 419
DraI	TTTAAA	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	694
EcoRII	CCWGG	1 cut(s)	89
FaeI	CATG	6 cut(s)	23, 224, 244, 260, 449, 680
FatI	CATG	6 cut(s)	19, 220, 240, 256, 445, 676
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	149, 263
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	78, 509
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	574
Hin1II	CATG	6 cut(s)	23, 224, 244, 260, 449, 680
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	6 cut(s)	56, 122, 391, 472, 517, 673
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188III	TCNNGA	2 cut(s)	521, 691
Hpy8I	GTNNAC	1 cut(s)	438
HpyAV	CCTTC	4 cut(s)	405, 521, 530, 534
HpyCH4V	TGCA	6 cut(s)	9, 37, 65, 145, 639, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 377, 636
HpyF3I	CTNAG	2 cut(s)	451, 626
Hsp92II	CATG	6 cut(s)	23, 224, 244, 260, 449, 680
Kzo9I	GATC	4 cut(s)	229, 266, 320, 419
LmnI	GCTCC	1 cut(s)	531
LweI	GCATC	1 cut(s)	154
MabI	ACCWGGT	1 cut(s)	89
MaeI	CTAG	2 cut(s)	78, 509
MalI	GATC	4 cut(s)	231, 268, 322, 421
MboI	GATC	4 cut(s)	229, 266, 320, 419
MboII	GAAGA	3 cut(s)	131, 241, 479
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	3 cut(s)	266, 320, 419
MluCI	AATT	7 cut(s)	104, 409, 427, 482, 491, 686, 694
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	5, 176, 188, 335, 480
MseI	TTAA	6 cut(s)	135, 414, 425, 578, 683, 700
MslI	CAYNNNNRTG	2 cut(s)	239, 663
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	43, 377, 636
NdeII	GATC	4 cut(s)	229, 266, 320, 419
NlaIII	CATG	6 cut(s)	23, 224, 244, 260, 449, 680
NlaIV	GGNNCC	3 cut(s)	160, 322, 573
PfeI	GAWTC	6 cut(s)	56, 122, 391, 472, 517, 673
PkrI	GCNGC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	160, 322, 573
PspPI	GGNCC	1 cut(s)	572
PsuI	RGATCY	3 cut(s)	266, 320, 419
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
RseI	CAYNNNNRTG	2 cut(s)	239, 663
SaqAI	TTAA	6 cut(s)	135, 414, 425, 578, 683, 700
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	229, 266, 320, 419
Sau96I	GGNCC	1 cut(s)	572
ScrFI	CCNGG	1 cut(s)	91
SexAI	ACCWGGT	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	239, 663
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	7 cut(s)	104, 409, 427, 482, 491, 686, 694
SsiI	CCGC	3 cut(s)	186, 244, 371
SspMI	CTAG	2 cut(s)	78, 509
StyD4I	CCNGG	1 cut(s)	89
TaqI	TCGA	2 cut(s)	117, 500
TasI	AATT	7 cut(s)	104, 409, 427, 482, 491, 686, 694
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	6 cut(s)	56, 122, 391, 472, 517, 673
Tru1I	TTAA	6 cut(s)	135, 414, 425, 578, 683, 700
Tru9I	TTAA	6 cut(s)	135, 414, 425, 578, 683, 700
TspDTI	ATGAA	4 cut(s)	36, 84, 540, 665
XagI	CCTNNNNNAGG	1 cut(s)	525
XapI	RAATTY	5 cut(s)	104, 409, 427, 686, 694
XspI	CTAG	2 cut(s)	78, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.