DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0405541 |
| rosa_laevigata | RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371 |
| rosa_roxburghii | Rroxscaffold_2G00103110 Rroxscaffold_3G00244540 |
| rosa_rugosa | Rorug04G0102200 Rorug06G0229300 |
| rosa_samantha | Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 153 |
| AciI | CCGC | 1 cut(s) | 151 |
| AcsI | RAATTY | 1 cut(s) | 254 |
| AfaI | GTAC | 1 cut(s) | 15 |
| AflII | CTTAAG | 1 cut(s) | 278 |
| AgsI | TTSAA | 5 cut(s) | 59, 121, 184, 247, 259 |
| AluBI | AGCT | 1 cut(s) | 220 |
| AluI | AGCT | 1 cut(s) | 220 |
| Alw21I | GWGCWC | 1 cut(s) | 295 |
| Ama87I | CYCGRG | 1 cut(s) | 294 |
| ApeKI | GCWGC | 1 cut(s) | 95 |
| ApoI | RAATTY | 1 cut(s) | 254 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 254 |
| AspS9I | GGNCC | 1 cut(s) | 271 |
| AsuHPI | GGTGA | 1 cut(s) | 150 |
| AvaI | CYCGRG | 1 cut(s) | 294 |
| AvaII | GGWCC | 1 cut(s) | 271 |
| Bbv12I | GWGCWC | 1 cut(s) | 295 |
| BbvI | GCAGC | 1 cut(s) | 82 |
| BccI | CCATC | 1 cut(s) | 53 |
| BceAI | ACGGC | 1 cut(s) | 222 |
| BfrI | CTTAAG | 1 cut(s) | 278 |
| BisI | GCNGC | 1 cut(s) | 96 |
| BlsI | GCNGC | 1 cut(s) | 97 |
| Bme18I | GGWCC | 1 cut(s) | 271 |
| BmeT110I | CYCGRG | 1 cut(s) | 294 |
| BmgT120I | GGNCC | 1 cut(s) | 271 |
| BmiI | GGNNCC | 1 cut(s) | 273 |
| BsaJI | CCNNGG | 2 cut(s) | 229, 238 |
| BseDI | CCNNGG | 2 cut(s) | 229, 238 |
| BseRI | GAGGAG | 1 cut(s) | 145 |
| BseXI | GCAGC | 1 cut(s) | 82 |
| BsiHKAI | GWGCWC | 1 cut(s) | 295 |
| BsiHKCI | CYCGRG | 1 cut(s) | 294 |
| BsmI | GAATGC | 1 cut(s) | 190 |
| BsoBI | CYCGRG | 1 cut(s) | 294 |
| Bsp1286I | GDGCHC | 1 cut(s) | 295 |
| Bsp143I | GATC | 1 cut(s) | 25 |
| BspACI | CCGC | 1 cut(s) | 151 |
| BspLI | GGNNCC | 1 cut(s) | 273 |
| BspTI | CTTAAG | 1 cut(s) | 278 |
| BsrBI | CCGCTC | 1 cut(s) | 153 |
| BssECI | CCNNGG | 2 cut(s) | 229, 238 |
| BssMI | GATC | 1 cut(s) | 25 |
| BssT1I | CCWWGG | 1 cut(s) | 229 |
| BstAFI | CTTAAG | 1 cut(s) | 278 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 2 cut(s) | 205, 222 |
| BstDSI | CCRYGG | 1 cut(s) | 238 |
| BstKTI | GATC | 1 cut(s) | 28 |
| BstMBI | GATC | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstV1I | GCAGC | 1 cut(s) | 82 |
| BtgI | CCRYGG | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 2 cut(s) | 205, 222 |
| Cfr13I | GGNCC | 1 cut(s) | 271 |
| Csp6I | GTAC | 1 cut(s) | 14 |
| CviAII | CATG | 2 cut(s) | 92, 125 |
| CviJI | RGCY | 3 cut(s) | 147, 203, 220 |
| CviKI_1 | RGCY | 3 cut(s) | 147, 203, 220 |
| CviQI | GTAC | 1 cut(s) | 14 |
| DpnI | GATC | 1 cut(s) | 27 |
| DpnII | GATC | 1 cut(s) | 25 |
| Eco130I | CCWWGG | 1 cut(s) | 229 |
| Eco47I | GGWCC | 1 cut(s) | 271 |
| Eco88I | CYCGRG | 1 cut(s) | 294 |
| EcoO109I | RGGNCCY | 1 cut(s) | 271 |
| EcoT14I | CCWWGG | 1 cut(s) | 229 |
| ErhI | CCWWGG | 1 cut(s) | 229 |
| FaeI | CATG | 2 cut(s) | 95, 128 |
| FaiI | YATR | 3 cut(s) | 35, 93, 126 |
| FatI | CATG | 2 cut(s) | 91, 124 |
| FauI | CCCGC | 1 cut(s) | 158 |
| Fnu4HI | GCNGC | 1 cut(s) | 96 |
| Fsp4HI | GCNGC | 1 cut(s) | 96 |
| GluI | GCNGC | 1 cut(s) | 96 |
| Hin1II | CATG | 2 cut(s) | 95, 128 |
| HindIII | AAGCTT | 1 cut(s) | 218 |
| HinfI | GANTC | 2 cut(s) | 112, 243 |
| HphI | GGTGA | 1 cut(s) | 150 |
| Hpy166II | GTNNAC | 1 cut(s) | 302 |
| Hpy188I | TCNGA | 1 cut(s) | 30 |
| Hpy188III | TCNNGA | 1 cut(s) | 247 |
| Hpy8I | GTNNAC | 1 cut(s) | 302 |
| HpyCH4V | TGCA | 2 cut(s) | 86, 188 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| Hsp92II | CATG | 2 cut(s) | 95, 128 |
| Kzo9I | GATC | 1 cut(s) | 25 |
| LmnI | GCTCC | 1 cut(s) | 158 |
| LpnPI | CCDG | 2 cut(s) | 38, 217 |
| Lsp1109I | GCAGC | 1 cut(s) | 82 |
| MalI | GATC | 1 cut(s) | 27 |
| MbiI | CCGCTC | 1 cut(s) | 153 |
| MboI | GATC | 1 cut(s) | 25 |
| MboII | GAAGA | 2 cut(s) | 71, 275 |
| MhlI | GDGCHC | 1 cut(s) | 295 |
| MluCI | AATT | 1 cut(s) | 254 |
| MnlI | CCTC | 3 cut(s) | 16, 166, 290 |
| MroXI | GAANNNNTTC | 1 cut(s) | 254 |
| MseI | TTAA | 2 cut(s) | 216, 279 |
| MspCI | CTTAAG | 1 cut(s) | 278 |
| Mva1269I | GAATGC | 1 cut(s) | 190 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 1 cut(s) | 25 |
| NlaIII | CATG | 2 cut(s) | 95, 128 |
| NlaIV | GGNNCC | 1 cut(s) | 273 |
| PaeR7I | CTCGAG | 1 cut(s) | 294 |
| PctI | GAATGC | 1 cut(s) | 190 |
| PdmI | GAANNNNTTC | 1 cut(s) | 254 |
| PfeI | GAWTC | 2 cut(s) | 112, 243 |
| PkrI | GCNGC | 1 cut(s) | 97 |
| PpuMI | RGGWCCY | 1 cut(s) | 271 |
| Psp5II | RGGWCCY | 1 cut(s) | 271 |
| PspN4I | GGNNCC | 1 cut(s) | 273 |
| PspPI | GGNCC | 1 cut(s) | 271 |
| PspPPI | RGGWCCY | 1 cut(s) | 271 |
| PspXI | VCTCGAGB | 1 cut(s) | 294 |
| RsaI | GTAC | 1 cut(s) | 15 |
| RsaNI | GTAC | 1 cut(s) | 14 |
| SaqAI | TTAA | 2 cut(s) | 216, 279 |
| SatI | GCNGC | 1 cut(s) | 96 |
| Sau3AI | GATC | 1 cut(s) | 25 |
| Sau96I | GGNCC | 1 cut(s) | 271 |
| SduI | GDGCHC | 1 cut(s) | 295 |
| SetI | ASST | 5 cut(s) | 57, 135, 222, 231, 301 |
| Sfr274I | CTCGAG | 1 cut(s) | 294 |
| SinI | GGWCC | 1 cut(s) | 271 |
| SlaI | CTCGAG | 1 cut(s) | 294 |
| SmlI | CTYRAG | 2 cut(s) | 278, 294 |
| SmoI | CTYRAG | 2 cut(s) | 278, 294 |
| Sse9I | AATT | 1 cut(s) | 254 |
| SsiI | CCGC | 1 cut(s) | 151 |
| StyI | CCWWGG | 1 cut(s) | 229 |
| TaqI | TCGA | 2 cut(s) | 136, 295 |
| TasI | AATT | 1 cut(s) | 254 |
| TatI | WGTACW | 1 cut(s) | 13 |
| TfiI | GAWTC | 2 cut(s) | 112, 243 |
| Tru1I | TTAA | 2 cut(s) | 216, 279 |
| Tru9I | TTAA | 2 cut(s) | 216, 279 |
| TseI | GCWGC | 1 cut(s) | 95 |
| TspDTI | ATGAA | 1 cut(s) | 80 |
| Vha464I | CTTAAG | 1 cut(s) | 278 |
| VpaK11BI | GGWCC | 1 cut(s) | 271 |
| XapI | RAATTY | 1 cut(s) | 254 |
| XhoI | CTCGAG | 1 cut(s) | 294 |
| XmnI | GAANNNNTTC | 1 cut(s) | 254 |