Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Reverse (-)

33853279 .. 33854465

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG296500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGAAAAGATTTGTCTAATGCACTTCATGCTGCTGCATCTGTTAAGAGTAGAACTGTTGTAGCTGAGGTTGTTGAAATTGACGGTGGGAGTGGATCTGCTTCTTTGACAGATCTGTTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCTTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCCAACCTTGGTCGCCGTGGATACAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGTTTATTTCCTGGAGGCCTACACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

108

Amino Acids

11.91

Weight (kDa)

10.14

Isoelectric Point (pI)

19.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	257
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	77, 121, 187, 262
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	2 cut(s)	65, 223
AluI	AGCT	2 cut(s)	65, 223
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	32, 35
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	298
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	19, 22
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	325
BfrI	CTTAAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	232, 241
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	232, 241
BseMII	CTCAG	3 cut(s)	57, 128, 311
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	19, 22
BshFI	GGCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	95, 112
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	3 cut(s)	58, 129, 310
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	103
BspTI	CTTAAG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	232, 241
BssMI	GATC	2 cut(s)	95, 112
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	2 cut(s)	58, 86
BstAFI	CTTAAG	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	208, 225
BstDEI	CTNAG	3 cut(s)	66, 137, 297
BstDSI	CCRYGG	1 cut(s)	241
BstKTI	GATC	2 cut(s)	98, 115
BstMBI	GATC	2 cut(s)	95, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	19, 22
BstX2I	RGATCY	2 cut(s)	95, 112
BstYI	RGATCY	2 cut(s)	95, 112
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	208, 225
Cfr13I	GGNCC	1 cut(s)	274
CviAII	CATG	2 cut(s)	29, 125
CviJI	RGCY	5 cut(s)	65, 148, 206, 223, 316
CviKI_1	RGCY	5 cut(s)	65, 148, 206, 223, 316
DdeI	CTNAG	3 cut(s)	66, 137, 297
DpnI	GATC	2 cut(s)	97, 114
DpnII	GATC	2 cut(s)	95, 112
Eco130I	CCWWGG	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	32, 128
FaiI	YATR	2 cut(s)	30, 126
FatI	CATG	2 cut(s)	28, 124
Fnu4HI	GCNGC	2 cut(s)	33, 36
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	1 cut(s)	325
GluI	GCNGC	2 cut(s)	33, 36
HaeIII	GGCC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	32, 128
HindIII	AAGCTT	1 cut(s)	221
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	138
HpyCH4III	ACNGT	2 cut(s)	58, 86
HpyCH4V	TGCA	3 cut(s)	23, 38, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	66, 137, 297
Hsp92II	CATG	2 cut(s)	32, 128
Kzo9I	GATC	2 cut(s)	95, 112
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	186, 220, 295, 322
Lsp1109I	GCAGC	2 cut(s)	19, 22
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	325
MalI	GATC	2 cut(s)	97, 114
MboI	GATC	2 cut(s)	95, 112
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	2 cut(s)	95, 112
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	78, 257
MnlI	CCTC	3 cut(s)	61, 168, 306
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	3 cut(s)	45, 219, 282
MspCI	CTTAAG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	95, 112
NlaIII	CATG	2 cut(s)	32, 128
NlaIV	GGNNCC	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	316
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	34, 37
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	274
PspPPI	RGGWCCY	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	95, 112
SaqAI	TTAA	3 cut(s)	45, 219, 282
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	2 cut(s)	95, 112
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	5 cut(s)	67, 72, 135, 225, 234
SfaNI	GCATC	1 cut(s)	47
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	78, 257
SseBI	AGGCCT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	325
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	58, 86
TasI	AATT	2 cut(s)	78, 257
Tru1I	TTAA	3 cut(s)	45, 219, 282
Tru9I	TTAA	3 cut(s)	45, 219, 282
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	2 cut(s)	32, 35
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	298
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.