Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Forward (+)

34961366 .. 34985893

Gene Structure 24528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG277400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCCCTCACTTGTACTTGACCGCGATCAGACCATCAAAAATGCCATCAAACAGGTTGAAGAAATGAGAAAAGATTTGTCTAATGCACTTCATGCTGCTGCATCTGTTGAGAGTAAAACTGCTGTAGCTGAGTTTGATTCAATTCCCCATAAAGGTCTACTGACACAAGATGTTGAAATTGACGGCGGGAGTGGATCTGCTTCTTTGACAGATCTATTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCCTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAGTAAGAGAGTTAAACTTGCCAACCTTGGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGTCACAACTAGAAATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

139

Amino Acids

15.29

Weight (kDa)

9.42

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	157
AccII	CGCG	1 cut(s)	24
AciI	CCGC	2 cut(s)	22, 186
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	356
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	7 cut(s)	59, 141, 176, 220, 286, 349, 361
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw21I	GWGCWC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	95, 98
ApoI	RAATTY	1 cut(s)	356
Asp700I	GAANNNNTTC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	82, 85
BccI	CCATC	2 cut(s)	41, 53
BceAI	ACGGC	2 cut(s)	199, 324
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	380
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	375
BmsI	GCATC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	331, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	331, 340
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	3 cut(s)	120, 227, 410
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	82, 85
Bsh1236I	CGCG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	25, 194, 211
BspACI	CCGC	2 cut(s)	22, 186
BspCNI	CTCAG	3 cut(s)	121, 228, 409
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	331, 340
BssMI	GATC	3 cut(s)	25, 194, 211
BssT1I	CCWWGG	1 cut(s)	331
BstAFI	CTTAAG	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	129, 236, 396
BstDSI	CCRYGG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	3 cut(s)	28, 197, 214
BstMBI	GATC	3 cut(s)	25, 194, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	82, 85
BstX2I	RGATCY	2 cut(s)	194, 211
BstYI	RGATCY	2 cut(s)	194, 211
BtgI	CCRYGG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	2 cut(s)	92, 224
CviJI	RGCY	3 cut(s)	128, 247, 305
CviKI_1	RGCY	3 cut(s)	128, 247, 305
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	3 cut(s)	129, 236, 396
DpnI	GATC	3 cut(s)	27, 196, 213
DpnII	GATC	3 cut(s)	25, 194, 211
Eco130I	CCWWGG	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	95, 227
FaiI	YATR	5 cut(s)	93, 150, 225, 416, 418
FatI	CATG	2 cut(s)	91, 223
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	96, 99
Fsp4HI	GCNGC	2 cut(s)	96, 99
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	2 cut(s)	96, 99
Hin1II	CATG	2 cut(s)	95, 227
HinfI	GANTC	2 cut(s)	137, 345
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	30, 237
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	86, 101, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	3 cut(s)	129, 236, 396
Hsp92II	CATG	2 cut(s)	95, 227
Kzo9I	GATC	3 cut(s)	25, 194, 211
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	4 cut(s)	38, 264, 285, 319
Lsp1109I	GCAGC	2 cut(s)	82, 85
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	3 cut(s)	27, 196, 213
MboI	GATC	3 cut(s)	25, 194, 211
MboII	GAAGA	2 cut(s)	71, 377
MflI	RGATCY	2 cut(s)	194, 211
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	4 cut(s)	141, 177, 356, 411
MnlI	CCTC	2 cut(s)	16, 267
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	2 cut(s)	318, 381
MspCI	CTTAAG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	292
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	3 cut(s)	25, 194, 211
NlaIII	CATG	2 cut(s)	95, 227
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	137, 345
PkrI	GCNGC	2 cut(s)	97, 100
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	373
PspPPI	RGGWCCY	1 cut(s)	373
PsuI	RGATCY	2 cut(s)	194, 211
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	318, 381
SatI	GCNGC	2 cut(s)	96, 99
Sau3AI	GATC	3 cut(s)	25, 194, 211
Sau96I	GGNCC	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	5 cut(s)	57, 130, 157, 234, 333
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	4 cut(s)	141, 177, 356, 411
SsiI	CCGC	2 cut(s)	22, 186
SspMI	CTAG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	331
TasI	AATT	4 cut(s)	141, 177, 356, 411
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	137, 345
Tru1I	TTAA	2 cut(s)	318, 381
Tru9I	TTAA	2 cut(s)	318, 381
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	2 cut(s)	95, 98
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.