Rh1BG178600

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011617
Physical Location & Seq
Reverse (-)
28530975 .. 28535480
4506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG178600.1

Sequence Viewer

Length: 375 bp
ATGCCCTCACTTGTACTTGACCGCGATCAGACCATAAAAAATGCCATCAAACAGGTTGAAGAAATGAGAAAAGATTTGTCTGATGCACTTCATGCTGCTACATCTGTTGAGAGTAGAACTGTTGTAGCTGAGGTTGTTGAAATTGACGGTGGGAGTGGATCTGCTTCTTTGACAATTGTGCCTGATTATCTATTGAATGCAACAACTAAAGAAGCCAACAAGAGAGTTAAGCTTGCCAACCTTGCTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGGCTCATGGCAAAGGGAAAGTGACTGACATTCACCCCGTTTTCATGAGCATGCCAATAGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

9.19

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 1 cut(s) 15
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 5 cut(s) 59, 140, 196, 259, 271
AluBI AGCT 2 cut(s) 128, 232
AluI AGCT 2 cut(s) 128, 232
Alw21I GWGCWC 1 cut(s) 307
AlwI GGATC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 307
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 234
BfrI CTTAAG 1 cut(s) 290
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 285
BmsI GCATC 1 cut(s) 73
Bpu10I CCTNAGC 2 cut(s) 129, 306
BsaJI CCNNGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 120, 320
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 2 cut(s) 25, 158
BspACI CCGC 1 cut(s) 22
BspCNI CTCAG 2 cut(s) 121, 319
BspFNI CGCG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 25, 158
Bst4CI ACNGT 2 cut(s) 121, 149
BstAFI CTTAAG 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 234, 247, 359
BstDEI CTNAG 2 cut(s) 129, 306
BstDSI CCRYGG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 2 cut(s) 28, 161
BstMBI GATC 2 cut(s) 25, 158
BstMWI GCNNNNNNNGC 2 cut(s) 92, 242
BstNSI RCATGY 1 cut(s) 361
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 234, 247, 359
CciI TCATGA 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 14
CviAII CATG 4 cut(s) 92, 314, 352, 358
CviJI RGCY 4 cut(s) 128, 215, 232, 311
CviKI_1 RGCY 4 cut(s) 128, 215, 232, 311
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 2 cut(s) 129, 306
DpnI GATC 2 cut(s) 27, 160
DpnII GATC 2 cut(s) 25, 158
Eco47I GGWCC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 283
FaeI CATG 4 cut(s) 95, 317, 355, 361
FaiI YATR 5 cut(s) 35, 93, 315, 353, 359
FatI CATG 4 cut(s) 91, 313, 351, 357
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
Hin1II CATG 4 cut(s) 95, 317, 355, 361
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 255
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 30, 82
Hpy188III TCNNGA 2 cut(s) 259, 352
HpyCH4III ACNGT 2 cut(s) 121, 149
HpyCH4V TGCA 2 cut(s) 86, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 242
HpyF3I CTNAG 2 cut(s) 129, 306
Hsp92II CATG 4 cut(s) 95, 317, 355, 361
Kzo9I GATC 2 cut(s) 25, 158
LpnPI CCDG 3 cut(s) 38, 195, 293
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 328
MalI GATC 2 cut(s) 27, 160
MboI GATC 2 cut(s) 25, 158
MboII GAAGA 2 cut(s) 71, 287
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 3 cut(s) 141, 174, 266
MnlI CCTC 3 cut(s) 16, 124, 361
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 2 cut(s) 228, 291
MslI CAYNNNNRTG 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 290
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 202
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 92, 242
NdeII GATC 2 cut(s) 25, 158
NlaIII CATG 4 cut(s) 95, 317, 355, 361
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 361
PaeI GCATGC 1 cut(s) 361
PagI TCATGA 1 cut(s) 351
PctI GAATGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 283
PspPPI RGGWCCY 1 cut(s) 283
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 2 cut(s) 228, 291
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 25, 158
Sau96I GGNCC 1 cut(s) 283
SduI GDGCHC 1 cut(s) 307
SetI ASST 6 cut(s) 57, 130, 135, 234, 243, 372
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 361
Sse9I AATT 3 cut(s) 141, 174, 266
SsiI CCGC 1 cut(s) 22
TaaI ACNGT 2 cut(s) 121, 149
TasI AATT 3 cut(s) 141, 174, 266
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 2 cut(s) 228, 291
Tru9I TTAA 2 cut(s) 228, 291
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 80, 340
TspRI CASTG 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.