Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Reverse (-)

4574070 .. 4575814

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGATCAGCTCCAGATTTTCCGGTAGTGCATTTCAAGATGATTATGACTCAAGAAAGTTTGATTCAATTCCCCATAAAGGTCTACTGACACAGGATGTTGAAATTGACGGTGGGAGTGGATATGCTTCTTTAACAGATCTGTTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCCTGCTCCTTACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAACAAGAGAGTTAAGCTTGCCAACCTTGGTCGCTGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCTGTGCTCAGTTTATTTCCTGGAGGCCTACATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

117

Amino Acids

13.19

Weight (kDa)

9.57

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	7 cut(s)	38, 69, 104, 148, 214, 277, 289
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	2 cut(s)	12, 250
AluI	AGCT	2 cut(s)	12, 250
Alw21I	GWGCWC	1 cut(s)	325
AoxI	GGCC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	337
BfaI	CTAG	1 cut(s)	352
BfrI	CTTAAG	1 cut(s)	308
BglII	AGATCT	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	103, 347
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	155, 338
BshFI	GGCC	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	6, 139
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	156, 337
BspLI	GGNNCC	1 cut(s)	303
BspTI	CTTAAG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	6, 139
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	164, 324
BstF5I	GGATG	2 cut(s)	103, 347
BstKTI	GATC	2 cut(s)	9, 142
BstMBI	GATC	2 cut(s)	6, 139
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	103, 347
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	301
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	5 cut(s)	12, 175, 233, 250, 343
CviKI_1	RGCY	5 cut(s)	12, 175, 233, 250, 343
DdeI	CTNAG	2 cut(s)	164, 324
DpnI	GATC	2 cut(s)	8, 141
DpnII	GATC	2 cut(s)	6, 139
Eco130I	CCWWGG	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	155
FaiI	YATR	4 cut(s)	48, 78, 126, 153
FatI	CATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	85
FokI	GGATG	2 cut(s)	110, 334
FspBI	CTAG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	3 cut(s)	50, 65, 273
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	4 cut(s)	15, 38, 54, 277
Hpy8I	GTNNAC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	32, 218
HpyF3I	CTNAG	2 cut(s)	164, 324
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	6, 139
LmnI	GCTCC	2 cut(s)	17, 187
LpnPI	CCDG	7 cut(s)	28, 37, 80, 192, 213, 322, 349
MaeI	CTAG	1 cut(s)	352
MalI	GATC	2 cut(s)	8, 141
MboI	GATC	2 cut(s)	6, 139
MboII	GAAGA	2 cut(s)	16, 305
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	69, 105, 284
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	3 cut(s)	134, 246, 309
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	337
NdeII	GATC	2 cut(s)	6, 139
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	343
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	65, 273
PfoI	TCCNGGA	1 cut(s)	335
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	301
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	134, 246, 309
Sau3AI	GATC	2 cut(s)	6, 139
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	5 cut(s)	14, 85, 162, 252, 261
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	2 cut(s)	52, 308
SmoI	CTYRAG	2 cut(s)	52, 308
Sse9I	AATT	3 cut(s)	69, 105, 284
SseBI	AGGCCT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	352
StuI	AGGCCT	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	113
TasI	AATT	3 cut(s)	69, 105, 284
TfiI	GAWTC	2 cut(s)	65, 273
Tru1I	TTAA	3 cut(s)	134, 246, 309
Tru9I	TTAA	3 cut(s)	134, 246, 309
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.