Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Forward (+)

37380018 .. 37401291

Gene Structure 21274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCCTCACTTGTACTTGACCGCGATCAGACCATAAAAAATGCCATCAAACAGGTTGAAGAAATGAGAAAAGATTTGTCTAATGCACTTCATGCTGCTGCATCTGTTGAGAAAGCTAGCAAGAGAGTTAAGCTTGCCAACCTTGGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCTTAAGTCTTTCAGTGCTCAGATATAGGATTGTTATAGCAACTTCAATCCCAAGCCTAAATACACAATCTGATGATTCACGGGGAGGCAAAGTTCGAAACCTTAACCTGCTGCACGAAAAATTTGCTCCTAACCACCGGAGCACAGTCAGATCAAGGGTGAATCTAGGAGAAGAACAATTGATTGAGGCAATCGATTTTGTCGTTTCATACACCCATTTTAATCTGGTTTCAGACTCGATTACATTATTTCACTGCAATATATATGGATCTACTCACCAATCTGTTGCAATTGATTATTTTCGAAGTTTTGAGCCTTACCCAGTTGAGAAGAAGCTCCAATGGCAACTCGGGTCGATCTCGCATTTCGTAAACAAGGCCGAGAGAGTGAGGGGTCGAGCAGAAGTAGGCTCCGTTGAGCCAAAGCTACTTCGGCGAACTTCGACGCCGGAGCAGACGGAGGTGTGCCAAGCCATTTTCAATAGGCTGCCGGAGAATAACGGCTCTCTCGACAACACAATACAGCAGCTCTACCGTGATACTTGCACACGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

247

Amino Acids

28.19

Weight (kDa)

9.6

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	303
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	2 cut(s)	167, 308
AcyI	GRCGYC	1 cut(s)	632
AfaI	GTAC	1 cut(s)	15
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	59, 160, 172, 234, 667
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	5 cut(s)	116, 133, 523, 613, 715
AluI	AGCT	5 cut(s)	116, 133, 523, 613, 715
Alw21I	GWGCWC	2 cut(s)	207, 332
AlwI	GGATC	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	5 cut(s)	95, 98, 298, 673, 712
ApoI	RAATTY	2 cut(s)	167, 308
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	358, 455
AsuII	TTCGAA	2 cut(s)	283, 490
AsuNHI	GCTAGC	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	184
Bbv12I	GWGCWC	2 cut(s)	207, 332
BbvI	GCAGC	5 cut(s)	82, 85, 285, 660, 724
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	2 cut(s)	135, 703
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BfaI	CTAG	2 cut(s)	117, 353
BfrI	CTTAAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	303
BisI	GCNGC	5 cut(s)	96, 99, 299, 674, 713
BlsI	GCNGC	5 cut(s)	97, 100, 300, 675, 714
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	186, 598
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	110
BmtI	GCTAGC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	503
Bpu14I	TTCGAA	2 cut(s)	283, 490
Bsa29I	ATCGAT	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	632
BsaJI	CCNNGG	2 cut(s)	142, 151
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bse1I	ACTGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	142, 151
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	509
BseXI	GCAGC	5 cut(s)	82, 85, 285, 660, 724
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	566
BshVI	ATCGAT	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	207, 332
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	3 cut(s)	325, 635, 677
BsnI	GGCC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	536
Bsp119I	TTCGAA	2 cut(s)	283, 490
Bsp1286I	GDGCHC	2 cut(s)	207, 332
Bsp143I	GATC	4 cut(s)	25, 338, 455, 543
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	1 cut(s)	219
BspDI	ATCGAT	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	186, 598
BspMI	ACCTGC	1 cut(s)	303
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	463
BspT104I	TTCGAA	2 cut(s)	283, 490
BspTI	CTTAAG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	142, 151
BssMI	GATC	4 cut(s)	25, 338, 455, 543
BssNI	GRCGYC	1 cut(s)	632
BssT1I	CCWWGG	1 cut(s)	142
Bst4CI	ACNGT	3 cut(s)	334, 722, 738
BstACI	GRCGYC	1 cut(s)	632
BstAFI	CTTAAG	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstBI	TTCGAA	2 cut(s)	283, 490
BstC8I	GCNNGC	2 cut(s)	118, 135
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	4 cut(s)	28, 341, 458, 546
BstMBI	GATC	4 cut(s)	25, 338, 455, 543
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 529, 619
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	5 cut(s)	82, 85, 285, 660, 724
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	566
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	207, 439
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	118, 135
Cfr13I	GGNCC	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	1 cut(s)	92
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	4 cut(s)	27, 340, 457, 545
DpnII	GATC	4 cut(s)	25, 338, 455, 543
Eco130I	CCWWGG	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	1 cut(s)	95
FaiI	YATR	8 cut(s)	35, 93, 213, 224, 397, 449, 451, 453
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	5 cut(s)	96, 99, 299, 674, 713
Fsp4HI	GCNGC	5 cut(s)	96, 99, 299, 674, 713
FspBI	CTAG	2 cut(s)	117, 353
GluI	GCNGC	5 cut(s)	96, 99, 299, 674, 713
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	3 cut(s)	325, 635, 677
HgaI	GACGC	1 cut(s)	640
Hin1I	GRCGYC	1 cut(s)	632
Hin1II	CATG	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	4 cut(s)	156, 263, 349, 422
HpaII	CCGG	3 cut(s)	325, 635, 677
HphI	GGTGA	2 cut(s)	358, 455
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	5 cut(s)	30, 209, 259, 338, 421
Hpy188III	TCNNGA	2 cut(s)	160, 695
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	634
HpyCH4III	ACNGT	3 cut(s)	334, 722, 738
HpyCH4V	TGCA	6 cut(s)	86, 101, 301, 444, 476, 732
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 529, 619
HpyF3I	CTNAG	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	632
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	4 cut(s)	25, 338, 455, 543
LmnI	GCTCC	5 cut(s)	319, 327, 528, 602, 637
LpnPI	CCDG	7 cut(s)	38, 308, 338, 398, 522, 648, 690
Lsp1109I	GCAGC	5 cut(s)	82, 85, 285, 660, 724
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	2 cut(s)	117, 353
MalI	GATC	4 cut(s)	27, 340, 457, 545
MboI	GATC	4 cut(s)	25, 338, 455, 543
MboII	GAAGA	4 cut(s)	71, 188, 371, 529
MfeI	CAATTG	2 cut(s)	365, 477
MflI	RGATCY	1 cut(s)	455
MhlI	GDGCHC	2 cut(s)	207, 332
MluCI	AATT	4 cut(s)	167, 308, 365, 477
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	5 cut(s)	16, 266, 367, 570, 640
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	4 cut(s)	129, 191, 291, 408
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	3 cut(s)	325, 635, 677
MunI	CAATTG	2 cut(s)	365, 477
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	92, 529, 619
NdeII	GATC	4 cut(s)	25, 338, 455, 543
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	2 cut(s)	186, 598
NmeAIII	GCCGAG	1 cut(s)	592
NspV	TTCGAA	2 cut(s)	283, 490
PcsI	WCGNNNNNNNCGW	2 cut(s)	387, 693
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	156, 263, 349
PkrI	GCNGC	5 cut(s)	97, 100, 300, 675, 714
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	186, 598
PspPI	GGNCC	1 cut(s)	184
PspPPI	RGGWCCY	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	129, 191, 291, 408
SatI	GCNGC	5 cut(s)	96, 99, 299, 674, 713
Sau3AI	GATC	4 cut(s)	25, 338, 455, 543
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	2 cut(s)	207, 332
SfaNI	GCATC	1 cut(s)	110
SfuI	TTCGAA	2 cut(s)	283, 490
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	4 cut(s)	167, 308, 365, 477
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	2 cut(s)	117, 353
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	3 cut(s)	334, 722, 738
TaqI	TCGA	8 cut(s)	283, 381, 425, 490, 542, 583, 629, 696
TasI	AATT	4 cut(s)	167, 308, 365, 477
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	156, 263, 349
Tru1I	TTAA	4 cut(s)	129, 191, 291, 408
Tru9I	TTAA	4 cut(s)	129, 191, 291, 408
TscAI	CASTG	2 cut(s)	207, 446
TseI	GCWGC	5 cut(s)	95, 98, 298, 673, 712
TspDTI	ATGAA	2 cut(s)	80, 384
TspGWI	ACGGA	2 cut(s)	589, 659
TspRI	CASTG	2 cut(s)	207, 446
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	167, 308
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	2 cut(s)	117, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.