Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Reverse (-)

56106516 .. 56109788

Gene Structure 3273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030134

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATGCATGTCTCTTCTCAGCTCCTCATCCAACAGTGCTACAGGAGTAAAGAGATACAAACTACCTCAGTTCTCCACTCTTGTATTCGCCCTTCATTGAAGATTTCAATTCTGAATGGAATTATCATGGGAGGTGGGGCTGGTGCTTCCGTCCATGGTAGACTCCGTGTTGCAACTGAGAATTTGGTAGATCTATTGAAACATGACAAGGTTCTAAGCAAGAAGCCCCCTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCCAACCTTGGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGGCCTACACCCTAGTGAGGAAGGGTGATCTCTTGATTGTGAGAGGAGGAATGAGGAGTGTCGAGTTCAAGGTTATTGAGACTGATCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

157

Amino Acids

17.31

Weight (kDa)

10.17

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	16 - 62	1.4e-08	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	181, 335
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	7 cut(s)	100, 108, 199, 265, 328, 340, 445
AleI	CACNNNNGTG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	22, 301
AluI	AGCT	2 cut(s)	22, 301
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	16, 449
AlwI	GGATC	1 cut(s)	455
AoxI	GGCC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	181, 335
Asp700I	GAANNNNTTC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	230, 413
AvaII	GGWCC	1 cut(s)	352
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
Bbv12I	GWGCWC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	16, 449
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	40
BfrI	CTTAAG	1 cut(s)	359
BglII	AGATCT	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	154, 310, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	154, 310, 319
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMII	CTCAG	4 cut(s)	32, 81, 168, 389
BseRI	GAGGAG	4 cut(s)	14, 225, 435, 445
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	2 cut(s)	16, 449
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	190, 403, 460
Bsp19I	CCATGG	1 cut(s)	154
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	4 cut(s)	31, 80, 169, 388
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	154, 310, 319
BssMI	GATC	3 cut(s)	190, 403, 460
BssT1I	CCWWGG	2 cut(s)	154, 310
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	19
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	286, 303
BstDEI	CTNAG	5 cut(s)	18, 67, 177, 215, 375
BstDSI	CCRYGG	2 cut(s)	154, 319
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	3 cut(s)	193, 406, 463
BstMAI	GTCTC	2 cut(s)	16, 449
BstMBI	GATC	3 cut(s)	190, 403, 460
BstNSI	RCATGY	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	2 cut(s)	154, 319
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	41, 376
Cac8I	GCNNGC	2 cut(s)	286, 303
Cfr13I	GGNCC	1 cut(s)	352
CviAII	CATG	4 cut(s)	8, 127, 155, 203
CviJI	RGCY	6 cut(s)	22, 140, 226, 284, 301, 380
CviKI_1	RGCY	6 cut(s)	22, 140, 226, 284, 301, 380
DdeI	CTNAG	5 cut(s)	18, 67, 177, 215, 375
DpnI	GATC	3 cut(s)	192, 405, 462
DpnII	GATC	3 cut(s)	190, 403, 460
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	154, 310
Eco147I	AGGCCT	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	154, 310
EcoT22I	ATGCAT	1 cut(s)	9
ErhI	CCWWGG	2 cut(s)	154, 310
FaeI	CATG	4 cut(s)	11, 130, 158, 206
FaiI	YATR	4 cut(s)	9, 128, 156, 204
FatI	CATG	4 cut(s)	7, 126, 154, 202
FblI	GTMKAC	1 cut(s)	160
FokI	GGATG	1 cut(s)	14
FspBI	CTAG	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	380
Hin1II	CATG	4 cut(s)	11, 130, 158, 206
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	2 cut(s)	162, 324
HphI	GGTGA	2 cut(s)	230, 413
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	3 cut(s)	328, 409, 468
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	102, 391
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	7, 173, 269
HpyF3I	CTNAG	5 cut(s)	18, 67, 177, 215, 375
Hsp92II	CATG	4 cut(s)	11, 130, 158, 206
Kzo9I	GATC	3 cut(s)	190, 403, 460
LmnI	GCTCC	2 cut(s)	27, 238
LpnPI	CCDG	6 cut(s)	28, 126, 243, 264, 298, 362
MaeI	CTAG	1 cut(s)	389
MalI	GATC	3 cut(s)	192, 405, 462
MboI	GATC	3 cut(s)	190, 403, 460
MboII	GAAGA	3 cut(s)	6, 112, 356
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	4 cut(s)	108, 120, 181, 335
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	35, 76, 125, 246, 387, 413, 416, 423
Mph1103I	ATGCAT	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	2 cut(s)	297, 360
MslI	CAYNNNNRTG	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	3 cut(s)	190, 403, 460
NlaIII	CATG	4 cut(s)	11, 130, 158, 206
NlaIV	GGNNCC	1 cut(s)	354
NsiI	ATGCAT	1 cut(s)	9
NspI	RCATGY	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	380
PctI	GAATGC	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	324
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	352
PspPPI	RGGWCCY	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	297, 360
Sau3AI	GATC	3 cut(s)	190, 403, 460
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	7 cut(s)	24, 68, 136, 213, 303, 312, 450
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	108, 120, 181, 335
SseBI	AGGCCT	1 cut(s)	380
SspMI	CTAG	1 cut(s)	389
StuI	AGGCCT	1 cut(s)	380
StyI	CCWWGG	2 cut(s)	154, 310
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	438
TasI	AATT	4 cut(s)	108, 120, 181, 335
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	297, 360
Tru9I	TTAA	2 cut(s)	297, 360
TscAI	CASTG	2 cut(s)	41, 376
TspDTI	ATGAA	1 cut(s)	84
TspGWI	ACGGA	2 cut(s)	139, 155
TspRI	CASTG	2 cut(s)	41, 376
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	2 cut(s)	181, 335
XceI	RCATGY	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.